View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_19 (Length: 389)
Name: NF8379_low_19
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 46290706 - 46290354
Alignment:
| Q |
19 |
aggcgtgtattgatcagtcaagaggcagtaggacaataggtattcaataggaaaggggatggatggtgagggtgttctcttcataaagtgctcgttcact |
118 |
Q |
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| T |
46290706 |
aggcgtgtattgatcagtcaagaggcagtaggacaataggtattcaataggaaaggggatggatggtgagggtgttctcttcataaagtgctcgttcact |
46290607 |
T |
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| Q |
119 |
ttagctttctgaattctagcaataatacagattttctttcactcttttgtccnnnnnnnctgcctttatgttttatcacaaactactaggatcctaacat |
218 |
Q |
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| T |
46290606 |
ttagctttctgaattctagcaataatacagattttctttcactc--ttgtcctttttttcggcctttatgttttatcacaaactaccaggatcctaacat |
46290509 |
T |
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| Q |
219 |
agttcaggccaaattacttcgggattacaaacttgaaaaatattttgattaatatttctcacacaagagtaagtctatatacatctattcttcttcnnnn |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46290508 |
agttcaggccaaattacttcggaattacaaacttgaaaaatattttgattaatatttctcacacaagagtaagtctatatacatcta---ttcttcaaaa |
46290412 |
T |
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| Q |
319 |
nnntccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataagaa |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290411 |
aaatccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataagaa |
46290354 |
T |
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