View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_25 (Length: 319)
Name: NF8379_low_25
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 3351953 - 3352235
Alignment:
| Q |
15 |
tttggtgttctagaaaggtctagattcatatctgagctgttatcacttccattgctccaagaaccttcattttcnnnnnnnaggctaatagttccatttt |
114 |
Q |
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| T |
3351953 |
tttggtgttctagaaaggtctagattcatatctgagctgttatcacttccattgctccaagaaccttcattttctttttttaggctaatagttccatttt |
3352052 |
T |
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| Q |
115 |
caaagcaatcccttttctttagagtttgtagctgcaaacaccatatatagtaaggtcttcatgaatgtatgtatcacattatnnnnnnnnngttattgta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
3352053 |
caaagcaatcccttttctttagagtttgtagctgcaaacaccatatatagtaaggtcttcatgaatgtatgtatcacaatataaaaaaaaa-ttattgta |
3352151 |
T |
|
| Q |
215 |
ttcatatacagtaaggtctgcatgaaaatacggtcgcaattgcagttgggatgcgattgcgaaaatctttaaatcatttatatt |
298 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3352152 |
ttcatatatagtaaggtctgcatgaaaatacggttgcaattgcagttgggatgcgattgcgaaaatctttaaatcatttatatt |
3352235 |
T |
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