View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_27 (Length: 299)
Name: NF8379_low_27
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 19995858 - 19995597
Alignment:
| Q |
1 |
ttcatcaacatcgttgaggctttcaccggaacaagttgataagttgaagaaaaaagcaaatgaaaatggtaattttgcaacgaagacaaaaggatcgagg |
100 |
Q |
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| T |
19995858 |
ttcatcaacattattgaggctttcaccggaacaagttgataagttgaagaaaaaagcaaatgaaaatggtaattttgcaacgaagaaaaaaggatcgagg |
19995759 |
T |
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| Q |
101 |
ccttttagtagatatgaagcaataggtgcacatatat----ggagatgtgcatctaaggcacgtaaacttgaagagaatcaacaaagtgttgttagattt |
196 |
Q |
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| T |
19995758 |
ccttttagtagatttgaagcaataggtgcacatatatatatggagatgtgcatctaaggcacgtaaacttgaagagaatcaacaaagtgttgttagattt |
19995659 |
T |
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| Q |
197 |
aattctgatattagagcaagaatgataccacctcttcctaaaaactattttgggaatgcttt |
258 |
Q |
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| T |
19995658 |
aattctgatattagagcaagaatgataccacctcttcccaaaaactattttgggaatgcttt |
19995597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 8323650 - 8323393
Alignment:
| Q |
1 |
ttcatcaacatcgttgaggctttcaccggaacaagttgataagttgaagaaaaaagcaaatgaaaatggtaattttgcaacgaagacaaaaggatcgagg |
100 |
Q |
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| T |
8323650 |
ttcagcaacattgttgcgactttcgccggaacaagttgataagttgaagaaaaaagcaaatgaaaatgacattcttgcaatcaagaataaagggtcaagg |
8323551 |
T |
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| Q |
101 |
ccttttagtagatatgaagcaataggtgcacatatatggagatgtgcatctaaggcacgtaaacttgaagagaatcaacaaagtgttgttagatttaatt |
200 |
Q |
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| T |
8323550 |
ccatttagtagatacgaagcaattagtgcacatatatggaaatgtgcttctagggcacgtgagcttgaagagaatcaagaaagtgtagttagattcaatg |
8323451 |
T |
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| Q |
201 |
ctgatattagagcaagaatgataccacctcttcctaaaaactattttgggaatgcttt |
258 |
Q |
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| T |
8323450 |
ctgatattagaacaagattggttccacctcttccaaagaactattttgggaatgcttt |
8323393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 18317410 - 18317325
Alignment:
| Q |
107 |
agtagatatgaagcaataggtgcacatatatggagatgtgcatctaaggcacgtaaacttgaagagaatcaacaaagtgttgttag |
192 |
Q |
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| T |
18317410 |
agtagatttgaagcaattagtgcacatatatggaaaagtgcttctaaagcacgtaagcttgaagagaatcaacaaagtgttgttag |
18317325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 18315462 - 18315548
Alignment:
| Q |
106 |
tagtagatatgaagcaataggtgcacatatatggagatgtgcatctaaggcacgtaaacttgaagagaatcaacaaagtgttgttag |
192 |
Q |
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|||||||| |||||| || ||||||||||||||| | | || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18315462 |
tagtagatttgaagctattagtgcacatatatggaaaagcgcttctaaggcacgtaagcttgaagagaatcaacaaagtgttgttag |
18315548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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