View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_28 (Length: 258)
Name: NF8379_low_28
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 46668285 - 46668066
Alignment:
| Q |
17 |
tcaggttgagcatcaggcgcggctgaagttgagcctccaggttgagctttgcgcgcggttgaagttgagcattcaggttgagcatgtaaaacttgggaaa |
116 |
Q |
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| T |
46668285 |
tcaggttgagcatcaggcgcggctgaagttgagcctccaggttgagcattgcgcgcggttgaagttgagcattcagattgagcatgtaaaacttgggaaa |
46668186 |
T |
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| Q |
117 |
ttagttgatcatcatccatggttgtattcaaaataaaacctgggaaataggttgttatctccctgcattaattaatgacaattgtaaccaagtaaattac |
216 |
Q |
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| T |
46668185 |
ttagttgatcatcatccatggttgtattcaaaataaaacctgggaaataggttgttatctccctgcattaattaatgacaattgtaaccaagtaaattac |
46668086 |
T |
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| Q |
217 |
actatagtttcaacatcaac |
236 |
Q |
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| T |
46668085 |
actatagtttcaacatcaac |
46668066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 46668390 - 46668305
Alignment:
| Q |
17 |
tcaggttgagcatcaggcgcggctgaagttgagcctccaggttgagctttgcgcgcggttgaagttgagcattcaggttgagcatg |
102 |
Q |
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||||||||||||||| || ||||||||||||||| | |||||||||| | ||||||||||||||||| | ||| ||||||| |||| |
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| T |
46668390 |
tcaggttgagcatcacgcacggctgaagttgagcttacaggttgagcatcgcgcgcggttgaagttgggtattaaggttgaccatg |
46668305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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