View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8379_low_29 (Length: 254)
Name: NF8379_low_29
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38374714 - 38374948
Alignment:
| Q |
1 |
aagtccaacaacgaaaactcaaacacattctaccttctattccagctagctgttttttcagtttatctttctgaagcaagtaaactttcatcacatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38374714 |
aagtccaacaacgaaaactcaaacacattctaccttctattccagctagctgttttttcagtttatctttttgaagcaagtaaactttcatcacatcatc |
38374813 |
T |
|
| Q |
101 |
agcaagaccatatctggatagaaattgagcctcattatcagaaacaaatttggtgaatgccctaaatttatgccactcaacaaagtgaaatggaagacga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38374814 |
agcaagaccatatctggatagaaattgagcctcattatcagaaacaaatttggtgaatgccctaaatttatcccactcaacaaagtgaaatggaagacga |
38374913 |
T |
|
| Q |
201 |
tgttttatagtcatttgagtcatcgattcacgaac |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38374914 |
tgttttatagtcatttgagtcatcgattcacgaac |
38374948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38379878 - 38380112
Alignment:
| Q |
1 |
aagtccaacaacgaaaactcaaacacattctaccttctattccagctagctgttttttcagtttatctttctgaagcaagtaaactttcatcacatcatc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||| || ||| |||| ||||||||||||| ||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
38379878 |
aagtccaacaacgaaagctcaaacacactccaccctcaattgcagcaagctgttttttcaatttctctttttcaagcaagtaaactttcatcacatcatt |
38379977 |
T |
|
| Q |
101 |
agcaagaccatatctggatagaaattgagcctcattatcagaaacaaatttggtgaatgccctaaatttatgccactcaacaaagtgaaatggaagacga |
200 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||| ||||||||||| |||||| ||||||||| | |||||||||| | ||||||||||| || |
|
|
| T |
38379978 |
agcaacaccatatctagaaagaaattgagcctcattgaacgaaacaaatttagtgaattccctaaattcaccccactcaacagaccgaaatggaagatga |
38380077 |
T |
|
| Q |
201 |
tgttttatagtcatttgagtcatcgattcacgaac |
235 |
Q |
| |
|
| |||||||||||||||||| || ||||||||||| |
|
|
| T |
38380078 |
ttttttatagtcatttgagtaattgattcacgaac |
38380112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38369985 - 38370219
Alignment:
| Q |
1 |
aagtccaacaacgaaaactcaaacacattctaccttctattccagctagctgttttttcagtttatctttctgaagcaagtaaactttcatcacatcatc |
100 |
Q |
| |
|
||||||||||| |||| |||||||||| || ||| | | | |||| ||||||||||||| |||||| || | ||||||||||||||||||||||||| | |
|
|
| T |
38369985 |
aagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcacatcagc |
38370084 |
T |
|
| Q |
101 |
agcaagaccatatctggatagaaattgagcctcattatcagaaacaaatttggtgaatgccctaaatttatgccactcaacaaagtgaaatggaagacga |
200 |
Q |
| |
|
||| | || ||| || ||| || ||||||||||| |||| |||||||||| ||||||||||||| || ||||||| |||| |||||||||| | |
|
|
| T |
38370085 |
gacaacattatctctagaaagagatcgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatcccactcagcaaactgaaatggaatgtaa |
38370184 |
T |
|
| Q |
201 |
tgttttatagtcatttgagtcatcgattcacgaac |
235 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||| |
|
|
| T |
38370185 |
ctttttatagtcatttgagtaaccgaatcacgaac |
38370219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University