View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8379_low_3 (Length: 708)
Name: NF8379_low_3
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_3 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 14 - 695
Target Start/End: Complemental strand, 52181666 - 52180979
Alignment:
| Q |
14 |
actttcaactcgacaaccaagaccaagactagagaatgagtccggatcgaatgaaacacttatctataacactactcaggcaccaagtctagcaaatgaa |
113 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52181666 |
actttcaacttgacaaccaagaccaagacaagagaatgagtccggatcgaatgaaacacttatctataacactactcaggcaccaagtctagcaaatgaa |
52181567 |
T |
|
| Q |
114 |
ttacaacgggatgctactacatataggactggaaaacgtgggagtaaaagagtaaaatataatgatgatgtttttgatagcttattaagctcattgaaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52181566 |
ttacaacgggatgctactacatataggactggaaaacgtgggagtaaaagagtaaaatataatgatgatgtttttgatagcttattaacctcattgaaca |
52181467 |
T |
|
| Q |
214 |
agtttggtgagttttatgctagcagtgttgaaagtatgaaacaactctcatcttgnnnnnnnnacacgagaaacacgcagctgaaagaaggaatcaaatt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
52181466 |
agtttggtgagttttatgctagcagtgttgaaagtatgaaacaactctcatcttg-tttttttacacgagaaacacgcagctgaaagaaggaatcaagtt |
52181368 |
T |
|
| Q |
314 |
gtg----tccatattaaaagaaatagaaggactatccacttatgaggttgtgagggttggtatgcttatcacaaaagacaacaatctctgtgacnnnnnn |
409 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52181367 |
gtgtccatccatattaaaagaaatagaaggactatccacttatgaggttgtgagggctggtatgcttatcacaaaagacaacaatctctgtgactttttt |
52181268 |
T |
|
| Q |
410 |
nncacaccggatacttttgagttgaggaaggaatttgtgaagattgttttgagcaataatggttcttagaaggattcaaaatctttagtgctttgaatgt |
509 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52181267 |
ttcacactggatacttttgagttgaggaaggaatttgtgaagattgttttgagcaataatggttcttagaaggattcaaaatctttagtgctttgaatgt |
52181168 |
T |
|
| Q |
510 |
atttgaaaactcatgtgggaattgtctttatttgnnnnnnnnattagttgttgtatttatcattatgttatgagtgtgtttttgcaaaaacaaattccaa |
609 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52181167 |
gtttgaaaactcatgtaggaattgtctttatttg-tttttttattagttgttgtatttatcattatgttatgagtgtgtttttgc-aaaacaaattccaa |
52181070 |
T |
|
| Q |
610 |
tgcaagtga-----acatgagtgccatatgatatctttaaaatgaactaccatttgtataatgatggtgctaaagatactgcttgcttgat |
695 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52181069 |
tgcaagtgaacatgacatgagtgccatatgatatctttaaaatgaactaccatttgtataatgatggtgctaaagatactgcttgcttgat |
52180979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 403
Target Start/End: Original strand, 20320178 - 20320403
Alignment:
| Q |
176 |
tgatgatgtttttgatagcttattaagctcattgaacaagtttggtgagttttatgctagcagtgttgaaagtatgaaacaactctcatcttgnnnnnnn |
275 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||| ||||| ||||||||||||||| | || || || | ||| ||||||||| | ||||| |
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| T |
20320178 |
tgatgatgtttctgatagtttattatcttcattgaataagttaggtgagttttatgctggaagcgtggagaatattaaacaactcacgtcttgttttatg |
20320277 |
T |
|
| Q |
276 |
nacacgagaaacacgcagctgaaagaaggaatcaaattgtgtccatattaaaagaaatagaaggactatccacttatgaggttgtgagggttggtatgct |
375 |
Q |
| |
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|||||||| | | ||||||| || ||||| ||| |||| || | |||||||||||||||||| | ||| || ||| || || |||| ||||||| | |
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| T |
20320278 |
--cacgagaagctcacagctgataggaggaaccaagttgtctctcttttaaaagaaatagaaggattgtccgctgttgatgtggtaagggctggtatggt |
20320375 |
T |
|
| Q |
376 |
tatcacaaaagacaacaatctctgtgac |
403 |
Q |
| |
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|||||| |||||||| || || |||||| |
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| T |
20320376 |
tatcactaaagacaataacctttgtgac |
20320403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 403
Target Start/End: Original strand, 34150923 - 34151148
Alignment:
| Q |
176 |
tgatgatgtttttgatagcttattaagctcattgaacaagtttggtgagttttatgctagcagtgttgaaagtatgaaacaactctcatcttgnnnnnnn |
275 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||| ||||| ||||||||||||||| | || || || | ||| ||||||||| | ||||| |
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|
| T |
34150923 |
tgatgatgtttctgatagtttattatcttcattgaataagttaggtgagttttatgctggaagcgtggagaatattaaacaactcacgtcttgttttatg |
34151022 |
T |
|
| Q |
276 |
nacacgagaaacacgcagctgaaagaaggaatcaaattgtgtccatattaaaagaaatagaaggactatccacttatgaggttgtgagggttggtatgct |
375 |
Q |
| |
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|||||||| | | ||||||| || ||||| ||| |||| || | |||||||||||||||||| | ||| || ||| || || |||| ||||||| | |
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| T |
34151023 |
--cacgagaagctcacagctgataggaggaaccaagttgtctctcttttaaaagaaatagaaggattgtccgctgttgatgtggtaagggctggtatggt |
34151120 |
T |
|
| Q |
376 |
tatcacaaaagacaacaatctctgtgac |
403 |
Q |
| |
|
|||||| |||||||| || || |||||| |
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|
| T |
34151121 |
tatcactaaagacaataacctttgtgac |
34151148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 5668848 - 5668727
Alignment:
| Q |
136 |
ataggactggaaaacgtgggagtaaaagagtaaaatataatgatgatgtttttgatagcttattaagctcattgaacaagtttggtgagttttatgctag |
235 |
Q |
| |
|
||||||| ||||| |||||| | ||||| || || ||||||||||||| || ||||||| | | || ||||||||||| || |||||| ||||||||| |
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| T |
5668848 |
ataggaccggaaagcgtgggggaaaaagggtgaagtataatgatgatgcttctgatagcatgtcaaattcattgaacaaattgggtgagatttatgctaa |
5668749 |
T |
|
| Q |
236 |
cagtgttgaaagtatgaaacaa |
257 |
Q |
| |
|
||||||| | |||||||||| |
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| T |
5668748 |
tggtgttgagaatatgaaacaa |
5668727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 4078 - 3960
Alignment:
| Q |
116 |
acaacgggatgctactacatataggactggaaaacgtgggagtaaaagagtaaaatataatgatgatgtttttgatagcttattaagctcattgaacaag |
215 |
Q |
| |
|
|||||| ||| |||||| |||||||| ||||| |||||| | ||||| || || ||||| ||||||| || ||||||| | | || ||||||||||| |
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|
| T |
4078 |
acaacgtgattctactaattataggaccggaaagcgtgggggaaaaagggtgaagtataacgatgatgcttctgatagcatgtcaaattcattgaacaaa |
3979 |
T |
|
| Q |
216 |
tttggtgagttttatgcta |
234 |
Q |
| |
|
|| |||||| ||||||||| |
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|
| T |
3978 |
ttgggtgagatttatgcta |
3960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 10641041 - 10641103
Alignment:
| Q |
278 |
cacgagaaacacgcagctgaaagaaggaatcaaattgtgtccatattaaaagaaatagaagga |
340 |
Q |
| |
|
|||||||||||| ||||||| || ||||| |||||||| || || ||||||||||| |||||| |
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|
| T |
10641041 |
cacgagaaacacacagctgataggaggaaccaaattgtctctattttaaaagaaattgaagga |
10641103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 257
Target Start/End: Original strand, 10640878 - 10641019
Alignment:
| Q |
116 |
acaacgggatgctactacatataggactggaaaacgtgggagtaaaagagtaaaatataatgatgatgtttttgatagcttattaagctcattgaacaag |
215 |
Q |
| |
|
|||||| ||| |||||| |||||||| |||| |||||| | ||||| || || ||||| ||||||| || ||||||| | | || ||||||||||| |
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|
| T |
10640878 |
acaacgtgattctactaattataggaccagaaagcgtggggggaaaagggtgaagtataacgatgatgcttatgatagcatgtcaaattcattgaacaaa |
10640977 |
T |
|
| Q |
216 |
tttggtgagttttatgctagcagtgttgaaagtatgaaacaa |
257 |
Q |
| |
|
|| |||||| ||||||||| ||||||| | |||||||||| |
|
|
| T |
10640978 |
ttgggtgagatttatgctaatggtgttgagaatatgaaacaa |
10641019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 32714566 - 32714502
Alignment:
| Q |
278 |
cacgagaaacacgcagctgaaagaaggaatcaaattgtgtccatattaaaagaaatagaaggact |
342 |
Q |
| |
|
|||||||||||| ||||||| || ||||| || ||||| || || ||||||||||| |||||||| |
|
|
| T |
32714566 |
cacgagaaacacacagctgataggaggaaccagattgtctctattttaaaagaaattgaaggact |
32714502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 13339313 - 13339192
Alignment:
| Q |
136 |
ataggactggaaaacgtgggagtaaaagagtaaaatataatgatgatgtttttgatagcttattaagctcattgaacaagtttggtgagttttatgctag |
235 |
Q |
| |
|
||||||| ||||| ||||| | ||||| || || ||||||||||||| || ||||||| | | || ||||||||||| || |||||| ||||||||| |
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|
| T |
13339313 |
ataggaccggaaagtgtgggggaaaaagggtgaagtataatgatgatgcttctgatagcatgtcaaattcattgaacaaattgggtgagatttatgctaa |
13339214 |
T |
|
| Q |
236 |
cagtgttgaaagtatgaaacaa |
257 |
Q |
| |
|
||||||| | |||||||||| |
|
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| T |
13339213 |
tggtgttgagaatatgaaacaa |
13339192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 26664680 - 26664797
Alignment:
| Q |
116 |
acaacgggatgctactacatataggactggaaaacgtgggagtaaaagagtaaaatataatgatgatgtttttgatagcttattaagctcattgaacaag |
215 |
Q |
| |
|
|||||| ||| |||||| |||||||| ||||| |||||| | ||||| || || ||||| ||||||| || ||||||| | | || ||||||||||| |
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|
| T |
26664680 |
acaacgtgattctactaattataggaccggaaagcgtgggggaaaaagggtgaagtataacgatgatgcttctgatagcatgtcaaattcattgaacaaa |
26664779 |
T |
|
| Q |
216 |
tttggtgagttttatgct |
233 |
Q |
| |
|
|| |||||| |||||||| |
|
|
| T |
26664780 |
ttgggtgagatttatgct |
26664797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 26664843 - 26664907
Alignment:
| Q |
278 |
cacgagaaacacgcagctgaaagaaggaatcaaattgtgtccatattaaaagaaatagaaggact |
342 |
Q |
| |
|
|||||||||||| ||||||| || ||||| || ||||| || || ||||||||||| |||||||| |
|
|
| T |
26664843 |
cacgagaaacacacagctgataggaggaaccagattgtctctattttaaaagaaattgaaggact |
26664907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 257
Target Start/End: Original strand, 22904946 - 22905087
Alignment:
| Q |
116 |
acaacgggatgctactacatataggactggaaaacgtgggagtaaaagagtaaaatataatgatgatgtttttgatagcttattaagctcattgaacaag |
215 |
Q |
| |
|
|||||| ||| |||||| |||||||| |||| |||||| | ||||| || || ||||| ||||||| || ||||||| | | || ||||||||||| |
|
|
| T |
22904946 |
acaacgtgattctactaattataggaccagaaagcgtgggggaaaaagggtgaagtataacgatgatgcttctgatagcatgtcaaattcattgaacaaa |
22905045 |
T |
|
| Q |
216 |
tttggtgagttttatgctagcagtgttgaaagtatgaaacaa |
257 |
Q |
| |
|
|| |||||| ||||||||| ||||||| | |||||||||| |
|
|
| T |
22905046 |
ttgggtgagatttatgctaatggtgttgagaatatgaaacaa |
22905087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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