View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8379_low_30 (Length: 253)

Name: NF8379_low_30
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8379_low_30
NF8379_low_30
[»] chr1 (1 HSPs)
chr1 (15-253)||(28013308-28013546)
[»] chr4 (3 HSPs)
chr4 (113-193)||(47204483-47204565)
chr4 (29-142)||(14646713-14646828)
chr4 (16-112)||(12607369-12607466)
[»] chr6 (3 HSPs)
chr6 (29-140)||(3322668-3322781)
chr6 (16-141)||(31124600-31124727)
chr6 (161-214)||(13280866-13280919)
[»] scaffold0005 (1 HSPs)
scaffold0005 (29-142)||(170462-170577)
[»] chr7 (4 HSPs)
chr7 (16-142)||(17881883-17882010)
chr7 (57-141)||(30582049-30582133)
chr7 (71-141)||(24810456-24810526)
chr7 (57-110)||(6004449-6004502)
[»] chr8 (1 HSPs)
chr8 (62-116)||(21837056-21837109)
[»] chr5 (2 HSPs)
chr5 (16-115)||(24550031-24550131)
chr5 (57-142)||(24510652-24510737)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 28013308 - 28013546
Alignment:
Q  15 atgaacaaatctttttcaatgtctcttcacctaatattacccgtatttctatctatgactccctctaaatacgagaaacccctctaactttctctcaatc 114  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  28013308 atgaacaaatctttttcaatgtctcttcacccaatactacccgtatttctatctaggactccctctaaatacgataaacccctctaactttctctcaatc 28013407  T
Q  115 actaaccctaataattgactcaatcacaatttaaaaaggacggattaactccactaaaacaaaccaactctatgtttttcataattagtagcaacactag 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28013408 actaaccctagtaattgactcaatcacaatttaaaaaggacggattaactccactaaaacaaaccaactctatgtttttcataatcagtagcaacactag 28013507  T
Q  215 agtggtgtacaaacagatgaattacaactcaactaaaac 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28013508 agtggtgtacaaacagatgaattacaactcaactaaaac 28013546  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 47204483 - 47204565
Alignment:
Q  113 tcactaaccctaataattgactcaatcacaatttaaaaaggacggatt--aactccactaaaacaaaccaactctatgttttt 193  Q
    |||||||||||| |||||||||||||||||||||||||| | | ||||  |||||||||||||||||| ||||||||| ||||    
T  47204483 tcactaaccctagtaattgactcaatcacaatttaaaaatggcagattacaactccactaaaacaaacaaactctatgctttt 47204565  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 14646713 - 14646828
Alignment:
Q  29 ttcaatgtctcttcacctaatattaccc--gtatttctatctatgactccctctaaatacgagaaacccctctaactttctctcaatcactaaccctaat 126  Q
    ||||||| |||||||||||||| ||| |  ||||||||||||| ||||||| ||||||  ||||||||| ||| | |||||||||| |||||  |||| |    
T  14646713 ttcaatgcctcttcacctaataatactcatgtatttctatctaggactccccctaaatgtgagaaacccttctcattttctctcaaccactatacctagt 14646812  T
Q  127 aattgactcaatcaca 142  Q
     |||||||| ||||||    
T  14646813 gattgactcgatcaca 14646828  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 12607369 - 12607466
Alignment:
Q  16 tgaacaaatctttttcaatgtctcttcacctaatattaccc--gtatttctatctatgactccctctaaatacgagaaacccctctaactttctctcaa 112  Q
    |||||||| ||| |||| || ||||||||||||||||||||  |||||||||||||  |||||  ||||||| ||| ||||| | | ||||||||||||    
T  12607369 tgaacaaaccttgttcagtgcctcttcacctaatattacccgtgtatttctatctaaaactcctcctaaatatgag-aacccatttcactttctctcaa 12607466  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 3322668 - 3322781
Alignment:
Q  29 ttcaatgtctcttcacctaatattacccgt--atttctatctatgactccctctaaatacgagaaacccctctaactttctctcaatcactaaccctaat 126  Q
    ||||||| |||||||||| ||| |||||||  ||||||||||| |||| || || |||| |||||||| |||| ||||||||||||||||| ||| || |    
T  3322668 ttcaatgcctcttcaccttatactacccgtgtatttctatctaggacttcccctgaatatgagaaacctctctcactttctctcaatcactcaccatact 3322767  T
Q  127 aattgactcaatca 140  Q
     |||||||||||||    
T  3322768 gattgactcaatca 3322781  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 31124727 - 31124600
Alignment:
Q  16 tgaacaaatctttttcaatgtctcttcacctaatattacccgt--atttctatctatgactccctctaaatacgagaaacccctctaactttctctcaat 113  Q
    |||||||| ||| |||| |  |||||||||||||| ||| |||  |||||||| ||  |||||| | ||||| || |||||| ||||||||||||||||     
T  31124727 tgaacaaaccttgttcattacctcttcacctaatactacacgtgtatttctatataaaactcccccaaaatatgataaacccttctaactttctctcaac 31124628  T
Q  114 cactaaccctaataattgactcaatcac 141  Q
    | ||| ||||| | ||||||||||||||    
T  31124627 ccctatccctagtgattgactcaatcac 31124600  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 13280919 - 13280866
Alignment:
Q  161 aactccactaaaacaaaccaactctatgtttttcataattagtagcaacactag 214  Q
    ||||| |||||||||||||||||||| |||||| ||||  ||||||| ||||||    
T  13280919 aactcaactaaaacaaaccaactctaagtttttgataaacagtagcagcactag 13280866  T

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Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 170577 - 170462
Alignment:
Q  29 ttcaatgtctcttcacctaatattaccc--gtatttctatctatgactccctctaaatacgagaaacccctctaactttctctcaatcactaaccctaat 126  Q
    ||||||| |||||||||||||| ||| |  ||||||||||||| ||||||| ||||||  ||||||||| ||| | |||||||||| |||||  |||| |    
T  170577 ttcaatgcctcttcacctaataatactcatgtatttctatctaggactccccctaaatgtgagaaacccttctcattttctctcaaccactatacctagt 170478  T
Q  127 aattgactcaatcaca 142  Q
     |||||||| ||||||    
T  170477 gattgactcgatcaca 170462  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 17881883 - 17882010
Alignment:
Q  16 tgaacaaatctttttcaatgtctcttcacctaatattacccgt--atttctatctatgactccctctaaatacgagaaacccctctaactttctctcaat 113  Q
    |||||||| |||  ||| || ||||||||||||||||||  ||  |||||| |||| ||||||| ||||||  ||||||||| ||| | |||| ||||||    
T  17881883 tgaacaaaccttggtcactgcctcttcacctaatattacatgtgtatttctctctaggactccccctaaatttgagaaaccc-tctcattttcactcaat 17881981  T
Q  114 cactaaccctaataattgactcaatcaca 142  Q
    ||||||||| | | |||||||||||||||    
T  17881982 cactaaccccactgattgactcaatcaca 17882010  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 30582133 - 30582049
Alignment:
Q  57 gtatttctatctatgactccctctaaatacgagaaacccctctaactttctctcaatcactaaccctaataattgactcaatcac 141  Q
    |||||||||| ||  |||||||||||||| ||||||| ||||| ||||||||||||||| | | | || | ||||||||||||||    
T  30582133 gtatttctatttagaactccctctaaatatgagaaactcctctcactttctctcaatcattcagcatagtgattgactcaatcac 30582049  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 24810456 - 24810526
Alignment:
Q  71 gactccctctaaatacgagaaacccctctaactttctctcaatcactaaccctaataattgactcaatcac 141  Q
    ||||||| ||||| | ||||||||||||| ||||||||| ||||||| ||| || | |||||||| |||||    
T  24810456 gactccccctaaacatgagaaacccctctcactttctcttaatcactcaccatagtgattgactcgatcac 24810526  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 6004449 - 6004502
Alignment:
Q  57 gtatttctatctatgactccctctaaatacgagaaacccctctaactttctctc 110  Q
    ||||||||||||| ||||| | ||||||| ||||||||||||| | ||||||||    
T  6004449 gtatttctatctaggactctccctaaatatgagaaacccctctcattttctctc 6004502  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 21837109 - 21837056
Alignment:
Q  62 tctatctatgactccctctaaatacgagaaacccctctaactttctctcaatcac 116  Q
    |||||||| ||||||| ||||||| ||||| ||||||| ||||||||||||||||    
T  21837109 tctatctaggactccccctaaatatgagaa-cccctctcactttctctcaatcac 21837056  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 24550031 - 24550131
Alignment:
Q  16 tgaacaaatctttttcaatgtctcttcacctaatattacccgtat--ttctatctatgactccctctaaatacgagaaacccctctaactttctctcaat 113  Q
    ||||||||  || |||| || ||||||| ||||||  ||||||||  ||||||||| || |||| ||||||| ||||| ||||||| |||||||||||||    
T  24550031 tgaacaaactttgttcactgcctcttcatctaataccacccgtatatttctatctaggaatccccctaaatatgagaa-cccctctcactttctctcaat 24550129  T
Q  114 ca 115  Q
    ||    
T  24550130 ca 24550131  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 24510652 - 24510737
Alignment:
Q  57 gtatttctatctatgactccctctaaatacgagaaacccctctaactttctctcaatcactaaccctaataattgactcaatcaca 142  Q
    |||||| |||||| ||||||   |||||| ||||||| | ||| |||||||||||| ||||| || || | |||||||||||||||    
T  24510652 gtatttatatctaggactccgcgtaaatatgagaaactcttctcactttctctcaaccactatccttagtgattgactcaatcaca 24510737  T

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