View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_31 (Length: 252)
Name: NF8379_low_31
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_31 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 38864794 - 38864571
Alignment:
| Q |
17 |
accatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacctaattatggaaaagcaatgtgattagaagatataacaccaa |
116 |
Q |
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| T |
38864794 |
accatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacctaattatggaaaagcaatgtgattagaagatataacaccaa |
38864695 |
T |
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| Q |
117 |
ttagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaaattttctttacccgctgttatctttatcgaagtattgga |
216 |
Q |
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| T |
38864694 |
ttagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaaattttctttacccgttgttatctttatcgaagtattgga |
38864595 |
T |
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| Q |
217 |
aggcagcataaacatgttcttctc |
240 |
Q |
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| T |
38864594 |
aggcagtataaacatgttcttctc |
38864571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 38808602 - 38808818
Alignment:
| Q |
21 |
tcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacctaattatggaaaagcaatgtgattagaagatataacaccaattag |
120 |
Q |
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| T |
38808602 |
tcatgcatgttatactcatggagagcttgctctagttcttcaatggtgatgtacctaattatggaaaagcagtgagatcagaagatttgaa--caattag |
38808699 |
T |
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| Q |
121 |
tatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaaattttctttacccgctgttatctttatcgaagtattggaaggc |
220 |
Q |
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| T |
38808700 |
tatccaaaggaagggcaaatatatatccaaccatgttggttttacggatttatttaa-ttttctttacccgctgttatctttatcgaagaattggaaggc |
38808798 |
T |
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| Q |
221 |
agcataaacatgttcttctc |
240 |
Q |
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| T |
38808799 |
agtataaacatgttcttctc |
38808818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 73150 - 73206
Alignment:
| Q |
184 |
tttacccgctgttatctttatcgaagtattggaaggcagcataaacatgttcttctc |
240 |
Q |
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| T |
73150 |
tttacccgctgttatctttatcaaagtattggaaggcagtgtaaagatgttcttctc |
73206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 72971 - 73029
Alignment:
| Q |
18 |
ccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacct |
76 |
Q |
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| T |
72971 |
ccatcatgcatgttgtattcacggagagcttgatctagttcttcagtggtaatgaacct |
73029 |
T |
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