View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8379_low_32 (Length: 249)
Name: NF8379_low_32
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 37178716 - 37178477
Alignment:
| Q |
1 |
ttacaaatttcttagtatgtgggtcttaatatattattttaattagatatgtgatattctcaatgatttaacacatgactattcacataacgataccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37178716 |
ttacaaatttcttagtatgtgggtcttaatatattattttaattagatatgtgatattctcaatgatttaacacatgactattcacataacgataccata |
37178617 |
T |
|
| Q |
101 |
atatattagatcttggatcttgagaaagaaaaagagctttccaatttccatcgatgttatgatgatagctcaataagcagtcctaaaataaatatttaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37178616 |
atatattagatcttggatcttga----gaaaaagagctttccaatttccatcgatgttatgatgatagctcaataagcagtcctaagataaatatttaaa |
37178521 |
T |
|
| Q |
201 |
atggtaagcaaaaattcaaagtttgacatttcttttcatctcac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37178520 |
atggtaagcaaaaattcaaagtttgacatttcttttcatttcac |
37178477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University