View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_33 (Length: 249)
Name: NF8379_low_33
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2901295 - 2901141
Alignment:
| Q |
1 |
tgcttctctcaataaaaa-gtcacattgtcgccttgaaatcgaaattccacccaccttatacacatattgtgaaatttgagaccaaatttgggctcctct |
99 |
Q |
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| T |
2901295 |
tgcttctcttaataaaaaagtcacattgtcgccttgaaatcgaaattccacccaccttatacacatattgtgaaatttgagaccaaatttgggctcctct |
2901196 |
T |
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| Q |
100 |
aagtgtcttctttcattacctaaacttagaatcacaaatctctacatttcaaaaa |
154 |
Q |
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| T |
2901195 |
aagtgtcttctttcattacctaaacttagaatcacatatctctgcatttcaaaaa |
2901141 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 2900782 - 2900695
Alignment:
| Q |
158 |
tcgcaaatactgccaaagctctctattcc----ctccttttcaaacggagttcctccattactccttcgcacttcttcttgttcttct |
241 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
2900782 |
tcgcaaatactgccaaagctctctaatccattactccttttcaaaccgagttcctccatcactccttcgcacttcttcttgttcttct |
2900695 |
T |
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