View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_38 (Length: 241)
Name: NF8379_low_38
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_38 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28013524 - 28013745
Alignment:
| Q |
1 |
atgaattacaactcaactaaaacaaaccaactctaagtcttttgattgatcaatggcggtgctaaagtggtgtacaaaacaaacacatagactcaaggat |
100 |
Q |
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| T |
28013524 |
atgaattacaactcaactaaaacaaaccaactctaagtcttttgattgatcaatggcggtgctaaagtggtgtacaaaacaaacacaaagactcagggat |
28013623 |
T |
|
| Q |
101 |
catttgtttccaaatcgattggggttaggagtttaaacacagtttagattggtaaatcaatcaagaagaaaaatatgtgattatgtttcctaaaacaagg |
200 |
Q |
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| T |
28013624 |
catttgtttccaaatcgattggggttaggagtttaaacacagtttagattggtaaatcaatcaagaagaaaaatatgtgattatgtttcctaaaacaagg |
28013723 |
T |
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| Q |
201 |
agaagacaaaaccctagcacaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
28013724 |
agaagacaaaaccctagcacaa |
28013745 |
T |
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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40200115 - 40200191
Alignment:
| Q |
1 |
atgaattacaactcaactaaaacaaaccaactctaagtcttttgattgatcaatggcggtgctaaagtggtgtacaaa |
78 |
Q |
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| T |
40200115 |
atgaattacaactcaactaaaacaaaccaactctaagcctttgga-agatcaatggcggtgctagagtggtatacaaa |
40200191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 13280922 - 13280891
Alignment:
| Q |
7 |
tacaactcaactaaaacaaaccaactctaagt |
38 |
Q |
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| T |
13280922 |
tacaactcaactaaaacaaaccaactctaagt |
13280891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18896 - 18941
Alignment:
| Q |
1 |
atgaattacaactcaactaaaacaaaccaactctaagtcttttgat |
46 |
Q |
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|||||||||||||||||||| |||||||||||| ||| ||||||| |
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| T |
18896 |
atgaattacaactcaactaacacaaaccaactccaagcgttttgat |
18941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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