View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_39 (Length: 241)
Name: NF8379_low_39
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_39 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 9146943 - 9146720
Alignment:
| Q |
18 |
aaatctgtaagtgttgtgttcccattaattaaattttaatccacttgatatttaccaaaatgactaattttcatcgagtgttagataatatttgtttttt |
117 |
Q |
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| T |
9146943 |
aaatctgtaagtgttgtgttcccattaattaaattttaatccacttgatatttaccaaaatgactaattttcatcgagtgttagataatatttgtttttt |
9146844 |
T |
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| Q |
118 |
cattagttccctataattccttctaatatatatttagaaaaatgataacatgtaccctaaatatataatttctcttgaaattgatttccattttaagata |
217 |
Q |
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| T |
9146843 |
cattagttccctataattccttctaatatatatttagaaaaatgataacatgtactctaaatatataatttctcttgaaattgatttctattttaagata |
9146744 |
T |
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| Q |
218 |
acataacatgtttgctagaaacgc |
241 |
Q |
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| T |
9146743 |
acataacatgtttgctagaaacgc |
9146720 |
T |
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