View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8379_low_4 (Length: 689)

Name: NF8379_low_4
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8379_low_4
NF8379_low_4
[»] chr7 (9 HSPs)
chr7 (20-674)||(22199576-22200229)
chr7 (20-674)||(22237592-22238245)
chr7 (32-139)||(30703694-30703802)
chr7 (20-121)||(35035611-35035712)
chr7 (20-141)||(30413648-30413769)
chr7 (32-121)||(41616204-41616293)
chr7 (32-113)||(23701840-23701921)
chr7 (20-118)||(5546881-5546980)
chr7 (26-146)||(33999570-33999691)
[»] chr3 (9 HSPs)
chr3 (20-141)||(46798973-46799094)
chr3 (20-121)||(50121081-50121181)
chr3 (20-113)||(22926375-22926467)
chr3 (41-121)||(52796231-52796311)
chr3 (8-113)||(42791522-42791627)
chr3 (32-121)||(7754889-7754979)
chr3 (20-101)||(42684316-42684397)
chr3 (36-113)||(49033644-49033720)
chr3 (26-72)||(37653111-37653157)
[»] chr2 (6 HSPs)
chr2 (20-121)||(31807769-31807870)
chr2 (20-119)||(42435471-42435570)
chr2 (20-119)||(33078097-33078196)
chr2 (20-118)||(36613314-36613412)
chr2 (20-118)||(36621165-36621263)
chr2 (22-121)||(5443510-5443605)
[»] chr1 (4 HSPs)
chr1 (20-117)||(35159715-35159812)
chr1 (22-81)||(34502885-34502944)
chr1 (22-119)||(52435380-52435477)
chr1 (32-118)||(46593775-46593862)
[»] chr8 (8 HSPs)
chr8 (22-147)||(13068198-13068321)
chr8 (20-113)||(12506776-12506869)
chr8 (48-118)||(31452222-31452292)
chr8 (21-118)||(42027508-42027605)
chr8 (20-109)||(38939324-38939415)
chr8 (32-113)||(45394113-45394196)
chr8 (20-113)||(31969568-31969660)
chr8 (27-141)||(11708820-11708932)
[»] chr4 (6 HSPs)
chr4 (32-120)||(21622643-21622731)
chr4 (26-113)||(28115647-28115735)
chr4 (20-121)||(44655045-44655144)
chr4 (36-144)||(45096780-45096888)
chr4 (22-112)||(38616895-38616985)
chr4 (26-71)||(39402997-39403042)
[»] chr6 (5 HSPs)
chr6 (32-123)||(4601355-4601446)
chr6 (27-121)||(7246531-7246625)
chr6 (48-123)||(33755629-33755704)
chr6 (20-113)||(3435734-3435827)
chr6 (36-113)||(5583620-5583697)
[»] chr5 (3 HSPs)
chr5 (27-121)||(20869362-20869456)
chr5 (22-113)||(36784224-36784315)
chr5 (78-121)||(3425747-3425790)


Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 674
Target Start/End: Complemental strand, 22200229 - 22199576
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||   |||||| |||||||||| |||| |||||||||||||||||||||||||| |||||    
T  22200229 agtaatttttgtattgaaagatgtgtaatcaatacattaaaaatctaaaaagtgtctattttaacttacaatttcttcttttggcttccttaaccagtgc 22200130  T
Q  120 cc-ggagtcaccggttaacatgatcctaaatgaaattatgtaaggaaatatataaattgcaacaatttattactatgatgtaaattgaaatatgacatgt 218  Q
    || |||| ||| |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22200129 cccggaggcacaggttaac-----cctaaatgaaattatgtaaggaaatatataaattgcaacaatttattactatgatgtaaattgaaatatgacatgt 22200035  T
Q  219 tattttgacataataattatgttctgatccaatctgaacatataaatacattatacagtagttacttgaatatttgaacactgacaaccaaataattata 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||    
T  22200034 tattttgacataataattatgttctgatccaatctgaacatataaacacattatacagtaattacttaaatatttgaacactgacaaccaaataatttta 22199935  T
Q  319 tgacaattttggtgagttatagttatgtcattgtacaaatacaaacaaggacagtgtgaagtcttttgcaatgaaagattgaatacacccttttcaccaa 418  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  22199934 tgacatttttggtgagttatagttatgtcattgtacaaatacaaacaagtacagtgtgatgtcttttgcaatgaaagattgaatacaaccttttcaccaa 22199835  T
Q  419 tgtcatgtctcatggctccttccattggaccctttcaagttcatcaccaatagtctctttctttctctcaacaatggtgcaatgcaatgttcctccttgg 518  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22199834 tgtcatgtgtcatggctccttccattggaccctttcaagttcatctccaatagtctctttctttctctcaacaatggtgcaatgcaatattcctccttgg 22199735  T
Q  519 ttgttacca---ataataggacatgacaatgcatgtctctcttgttttgttttgactttttggtnnnnnnnntgtagaagatttttgatagaagatgaag 615  Q
    |||| ||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||    
T  22199734 ttgtaaccaattataataggacatgacaatggatgtctctcttgttttgttttgactttttggtaaaaaaaatgtagaagattttttatagaagatgaag 22199635  T
Q  616 cttggagatggagtcttagaaggattgtttaaggagggagataattgaagcaaaatgtt 674  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22199634 cttggagatgaagtcttagaaggattgtttaaggagggagataattgaagcaaaatgtt 22199576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 674
Target Start/End: Original strand, 22237592 - 22238245
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||   |||||| |||||||||| |||| |||||||||||||||||||||||||| |||||    
T  22237592 agtaatttttgtattgaaagatgtgtaatcaatacattaaaaatctaaaaagtgtctattttaacttacaatttcttcttttggcttccttaaccagtgc 22237691  T
Q  120 cc-ggagtcaccggttaacatgatcctaaatgaaattatgtaaggaaatatataaattgcaacaatttattactatgatgtaaattgaaatatgacatgt 218  Q
    || |||| ||| |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22237692 cccggaggcacaggttaac-----cctaaatgaaattatgtaaggaaatatataaattgcaacaatttattactatgatgtaaattgaaatatgacatgt 22237786  T
Q  219 tattttgacataataattatgttctgatccaatctgaacatataaatacattatacagtagttacttgaatatttgaacactgacaaccaaataattata 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||    
T  22237787 tattttgacataataattatgttctgatccaatctgaacatataaacacattatacagtaattacttaaatatttgaacactgacaaccaaataatttta 22237886  T
Q  319 tgacaattttggtgagttatagttatgtcattgtacaaatacaaacaaggacagtgtgaagtcttttgcaatgaaagattgaatacacccttttcaccaa 418  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  22237887 tgacatttttggtgagttatagttatgtcattgtacaaatacaaacaagtacagtgtgatgtcttttgcaatgaaagattgaatacaaccttttcaccaa 22237986  T
Q  419 tgtcatgtctcatggctccttccattggaccctttcaagttcatcaccaatagtctctttctttctctcaacaatggtgcaatgcaatgttcctccttgg 518  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22237987 tgtcatgtgtcatggctccttccattggaccctttcaagttcatctccaatagtctctttctttctctcaacaatggtgcaatgcaatattcctccttgg 22238086  T
Q  519 ttgttacca---ataataggacatgacaatgcatgtctctcttgttttgttttgactttttggtnnnnnnnntgtagaagatttttgatagaagatgaag 615  Q
    |||| ||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||    
T  22238087 ttgtaaccaattataataggacatgacaatggatgtctctcttgttttgttttgactttttggtaaaaaaaatgtagaagattttttatagaagatgaag 22238186  T
Q  616 cttggagatggagtcttagaaggattgtttaaggagggagataattgaagcaaaatgtt 674  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22238187 cttggagatgaagtcttagaaggattgtttaaggagggagataattgaagcaaaatgtt 22238245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 30703802 - 30703694
Alignment:
Q  32 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg-cccggagtcacc 130  Q
    |||||||| |||||||||||||||||||||| |||| || ||||| |||| |||| || ||||||||||||||||||||||| |||| ||||| | ||||    
T  30703802 attgaaagttgtgtaatcaatgcattaaaagattaacaagtgtctttttttactttcactttcttcttttggcttccttaaccagtgccccgggggcacc 30703703  T
Q  131 ggttaacat 139  Q
    |||||||||    
T  30703702 ggttaacat 30703694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 35035712 - 35035611
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||| | | | |||| |||| |||||||| | ||||||||| ||||| |||||    
T  35035712 agtaatttttgtattgaaagttgtgtattcaatgcattaaaagcttaaaaagtatatttttttacttacaatttctccctttggcttctttaaccagtgc 35035613  T
Q  120 cc 121  Q
    ||    
T  35035612 cc 35035611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 30413648 - 30413769
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    ||||||||||  ||| |||| | | |||||||| ||||||||  ||||||| ||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  30413648 agtaattttttcattaaaagttatttaatcaattcattaaaaatttaaaaagtgtcttttttgacttacaattttttcttttgacttccttaactagtgc 30413747  T
Q  120 ccggagtcaccggttaacatga 141  Q
    ||   | ||| |||||||||||    
T  30413748 cccaggacactggttaacatga 30413769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 41616204 - 41616293
Alignment:
Q  32 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 121  Q
    ||||||||||||||||| ||||||||||||  |||| || ||||| ||||||||| || |||||||||||| | |||||||| |||||||    
T  41616204 attgaaagatgtgtaattaatgcattaaaaaattaataagtgtcttttttgactttcactttcttcttttgccctccttaaccagtgccc 41616293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 23701840 - 23701921
Alignment:
Q  32 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||||||| | |||| |||||||||||||| |||||||| ||||  |||| ||||| |||||| |||||| |||||||||||    
T  23701840 attgaaagctatgtagtcaatgcattaaaaacttaaaaagtgtcattttttacttcaaatttcctcttttagcttccttaac 23701921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 5546980 - 5546881
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgact-tccaatttcttcttttggcttccttaactagtg 118  Q
    ||||||||||| |||||||  ||| |||||||||||||||||||||||||| ||| | |||| |||  | ||||| || |||||| ||||||||| ||||    
T  5546980 agtaatttttgcattgaaaattgtataatcaatgcattaaaagcttaaaaactgtattttttaactagcaaatttttttttttggattccttaaccagtg 5546881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 33999691 - 33999570
Alignment:
Q  26 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg-cccgga 124  Q
    |||||||||||||| ||||   ||| ||| |||||||||||||||||||   || ||||||  ||||||| ||||| | ||||||||| |||| |||| |    
T  33999691 ttttgtattgaaagttgtgctgtcattgcgttaaaagcttaaaaaatgttctttgtgacttaaaatttctacttttagtttccttaaccagtgtcccgaa 33999592  T
Q  125 gtcaccggttaacatgatccta 146  Q
    | ||| ||||||| ||| ||||    
T  33999591 ggcactggttaacgtgaaccta 33999570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 46799094 - 46798973
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||| | |  |||||||||||||||||||||||||| |||||    
T  46799094 agtaatttttgcattaaaagatgtgtaatcaatgcattaaaagcttaaaaagtgtctttttttattaacaatttcttcttttggcttccttaaccagtgc 46798995  T
Q  120 ccggagtcaccggttaacatga 141  Q
    || | | ||| |||||||||||    
T  46798994 ccagggacactggttaacatga 46798973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 50121081 - 50121181
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    |||||| |||| ||| |||| |||||||| |||| |||| ||||||||||||||||| |||||| || |||||||||||||| |||||||||||||||||    
T  50121081 agtaatatttgcattaaaagttgtgtaattaatgaattacaagcttaaaaaatgtctcttttgatttacaatttcttctttt-gcttccttaactagtgc 50121179  T
Q  120 cc 121  Q
    ||    
T  50121180 cc 50121181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 22926467 - 22926375
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||| ||||| || |||||| | |||||||| |||||||||||||||    
T  22926467 agtaatatttgcattgaaagttgtgtaatcaatgcattaaaagtttaaaaagtgtcttttctgacttac-atttcttcatttggcttccttaac 22926375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 52796311 - 52796231
Alignment:
Q  41 tgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 121  Q
    |||||||||||||||||||||| ||||||| ||||| |||||| ||  ||||||||||||||| ||||||||| |||||||    
T  52796311 tgtgtaatcaatgcattaaaagattaaaaagtgtctcttttgatttttaatttcttcttttggattccttaaccagtgccc 52796231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 42791522 - 42791627
Alignment:
Q  8 tgaaacggagggagtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttc 107  Q
    ||||||||| |||||||| |||  ||||| || ||| |||||||| |||||||| || ||||| ||||| |||| |||| |||||| ||||||| |||||    
T  42791522 tgaaacggatggagtaatattttcattgatagttgtataatcaatacattaaaaactcaaaaagtgtcttttttaacttacaattttttcttttagcttc 42791621  T
Q  108 cttaac 113  Q
    ||||||    
T  42791622 cttaac 42791627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 7754889 - 7754979
Alignment:
Q  32 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaa-tgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 121  Q
    ||||||||  |||||||||||| |||||||| |||||||  | ||| |||||| ||  |||||||| ||||||||||||||||||||||||    
T  7754889 attgaaagcagtgtaatcaatgaattaaaagtttaaaaatgtatcttttttgatttgtaatttcttgttttggcttccttaactagtgccc 7754979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 42684316 - 42684397
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttctttt 101  Q
    |||||||||| ||||| ||| |||||||| |||| ||||||||||| |||||| ||| |||  |||| ||||||||||||||    
T  42684316 agtaatttttatattgtaagttgtgtaattaatgtattaaaagctttaaaaatatctttttcaacttacaatttcttctttt 42684397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 49033720 - 49033644
Alignment:
Q  36 aaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||| |||||||| ||||||||||||  ||||||| ||| | ||||||||| |||||||||  |||||||||||||||    
T  49033720 aaagttgtgtaataaatgcattaaaaatttaaaaagtgttt-ttttgacttacaatttctttatttggcttccttaac 49033644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 37653111 - 37653157
Alignment:
Q  26 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaat 72  Q
    |||||||||||||| |||||| | |||| ||||||||||||||||||    
T  37653111 ttttgtattgaaagttgtgtagttaatgtattaaaagcttaaaaaat 37653157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 31807870 - 31807769
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  31807870 agtaatatttatgttgaaagttgtgtaatcaatgcattaaaagcttaaaaagtgtcttttttgacttacaatttcttcttttggcttccttaaccagtgc 31807771  T
Q  120 cc 121  Q
    ||    
T  31807770 cc 31807769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 42435570 - 42435471
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||   |||||| ||||| |||||| || |||||||||||||||||||||||||| |||||    
T  42435570 agtaatttttgtactgaaagatgtgtaatcaatgcattaaaaatctaaaaattgtcttttttgatttgcaatttcttcttttggcttccttaaccagtgc 42435471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 33078097 - 33078196
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    |||||| |||| |||||||| || ||||||||||||||||||| ||||||| | ||| ||||||||| || ||||||||||||||||||||||| |||||    
T  33078097 agtaatatttgcattgaaagctgagtaatcaatgcattaaaagattaaaaagtatcttttttgactttcactttcttcttttggcttccttaaccagtgc 33078196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 36613314 - 36613412
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg 118  Q
    |||||| |||| || ||||| ||||||||||||||||| ||| |||||||| ||||| |||| | || ||||||| |||||||||||||||||| ||||    
T  36613314 agtaatatttgcatggaaagttgtgtaatcaatgcattcaaaacttaaaaagtgtcttttttaatttacaatttcctcttttggcttccttaaccagtg 36613412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 36621165 - 36621263
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg 118  Q
    |||||| |||| || ||||| ||||||||||||||||| ||| |||||||| ||||| |||| | || ||||||| |||||||||||||||||| ||||    
T  36621165 agtaatatttgcatggaaagttgtgtaatcaatgcattcaaaacttaaaaagtgtcttttttaatttacaatttcctcttttggcttccttaaccagtg 36621263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 5443605 - 5443510
Alignment:
Q  22 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 121  Q
    |||| |||||||||| || ||||||||||||    ||||| |||||||| | |||||||||| ||  ||||||||||||| || |||||||| |||||||    
T  5443605 taatatttgtattgatagttgtgtaatcaat----taaaaacttaaaaagtatctattttgatttagaatttcttcttttagcatccttaaccagtgccc 5443510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 35159715 - 35159812
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagt 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||| |||||| || ||||||||||||||||||||||||||||||    
T  35159715 agtaatttttgcattgaaagatgtgtaatcaatgcattaaaagtttaaaaagtttcttttttgagttgcaatttcttcttttggcttccttaactagt 35159812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 34502944 - 34502885
Alignment:
Q  22 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctatttt 81  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  34502944 taatatttgcattgaaagttgtgtaatcaatgcattaaaagcttaaaaaatatctttttt 34502885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 52435477 - 52435380
Alignment:
Q  22 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    |||| |||| |||||||  ||| |||||||||||||||||| ||||||| | | | |||| | || || ||||||||||||||||||||||| |||||    
T  52435477 taatatttgcattgaaaactgtataatcaatgcattaaaagattaaaaagtatttttttttattttcactttcttcttttggcttccttaaccagtgc 52435380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 46593862 - 46593775
Alignment:
Q  32 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaat-ttcttcttttggcttccttaactagtg 118  Q
    |||||||  ||||||||||||| || |||| |||||||| | | | ||||||||| |||  |||||||||||||||||||||| ||||    
T  46593862 attgaaatttgtgtaatcaatgtataaaaaacttaaaaagtatattttttgacttacaaaattcttcttttggcttccttaaccagtg 46593775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 13068321 - 13068198
Alignment:
Q  22 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 121  Q
    |||| |||| |||||||| ||||||||||||| |||||||| ||||||| ||||| ||||||||  |||||| ||||||| ||||||||||| |||| ||    
T  13068321 taatatttgcattgaaagttgtgtaatcaatgtattaaaagtttaaaaagtgtcttttttgactcacaatttattcttttagcttccttaaccagtg-cc 13068223  T
Q  122 ggagtcaccggttaacatgatcctaa 147  Q
    || || |||||||||||||| |||||    
T  13068222 ggggt-accggttaacatgaccctaa 13068198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 12506869 - 12506776
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||||| ||| ||||||||| ||| |||||||| ||||||||  ||||||| ||||| ||||||||| |||||||||||||| | |||||||||    
T  12506869 agtaatatttttattgaaagttgtataatcaatacattaaaaatttaaaaagtgtcttttttgacttacaatttcttcttttagtttccttaac 12506776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 31452292 - 31452222
Alignment:
Q  48 tcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg 118  Q
    ||||||||||||||||||||||||||||  |||||| ||  |||||||||||||| |||||||||| ||||    
T  31452292 tcaatgcattaaaagcttaaaaaatgtcatttttgagttaaaatttcttcttttgacttccttaaccagtg 31452222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 42027508 - 42027605
Alignment:
Q  21 gtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg 118  Q
    |||||||||| ||| |||   ||||||||||| ||||||||| |||||| || ||| |||| |||| ||||||||||||||| |||||||||| ||||    
T  42027508 gtaatttttgcattaaaaaccgtgtaatcaatacattaaaagtttaaaatatatctttttttacttgcaatttcttcttttgacttccttaaccagtg 42027605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 38939324 - 38939415
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaa-gcttaaaaaatgtctattttgac-ttccaatttcttcttttggcttcct 109  Q
    ||||||||||  ||||||||||||||||||||||||||||||  | | |||| ||||| ||||||| || ||| ||||||||||||||||||    
T  38939324 agtaattttttcattgaaagatgtgtaatcaatgcattaaaattcctcaaaagtgtcttttttgactttgcaaattcttcttttggcttcct 38939415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 45394113 - 45394196
Alignment:
Q  32 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaa--tgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||||||| ||||||||||||| |||||||| ||||||||  | ||| |||| ||||  |||||||||||||| ||||||||||    
T  45394113 attgaaagttgtgtaatcaatgtattaaaagtttaaaaaaagtatctttttttacttataatttcttcttttgacttccttaac 45394196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 31969568 - 31969660
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||||| |||| |||||||| | | ||||||||  |||||||  ||||||  ||||| ||||||||| ||||||||||||||||||| ||||||    
T  31969568 agtaatatttgcattgaaagttatttaatcaataaattaaaaatttaaaatgtgtct-ttttgacttacaatttcttcttttggctttcttaac 31969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 11708820 - 11708932
Alignment:
Q  27 tttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcccggagt 126  Q
    ||||||||||||| |||||  ||| ||||||||| |||||||||  || | |||||||||  ||||||  ||||| ||||||||||| ||||||   ||     
T  11708820 tttgtattgaaagttgtgttgtcattgcattaaaggcttaaaaa--gtgttttttgacttaaaatttccacttttagcttccttaaccagtgccacaagg 11708917  T
Q  127 caccggttaacatga 141  Q
    ||| |||||||||||    
T  11708918 cactggttaacatga 11708932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 21622731 - 21622643
Alignment:
Q  32 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcc 120  Q
    |||||||| |||||||||||||||||||||  || |||||||||| |||| |||| |||||| ||||||||||||||||||| ||||||    
T  21622731 attgaaagttgtgtaatcaatgcattaaaaatttgaaaaatgtcttttttaacttacaattttttcttttggcttccttaaccagtgcc 21622643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 28115735 - 28115647
Alignment:
Q  26 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaa-tgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||||||||||||| |||| | | ||||||||||||| |||||||| ||||| |||| | || |||||| |||||||||||||||||||    
T  28115735 ttttgtattgaaagctgtgcagtgaatgcattaaaagtttaaaaaaatgtctttttttatttacaattttttcttttggcttccttaac 28115647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 44655144 - 44655045
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 119  Q
    |||||| |||| |||| ||| | ||||||||||||||||||||  |||||||| ||| |||  | ||  ||||||||||||||||||||||||| |||||    
T  44655144 agtaatatttgcattggaagttctgtaatcaatgcattaaaagtataaaaaatatcttttt--atttttaatttcttcttttggcttccttaaccagtgc 44655047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 45096888 - 45096780
Alignment:
Q  36 aaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcccggagtcaccggtta 135  Q
    |||| ||||||||||||| |||||||| ||||||  | | | |||| |||| ||||||||||||||| |||||||||| |||||   | | ||| |||||    
T  45096888 aaagctgtgtaatcaatgtattaaaagtttaaaatgtatattttttaacttacaatttcttcttttgacttccttaacgagtgcttcggggcactggtta 45096789  T
Q  136 acatgatcc 144  Q
    |||||||||    
T  45096788 acatgatcc 45096780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 38616985 - 38616895
Alignment:
Q  22 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaa 112  Q
    |||| ||| ||||||||| |||||||||||| ||||||||  |||| || | ||| |||||||||  | |||||||||||| |||||||||    
T  38616985 taatatttatattgaaagttgtgtaatcaatacattaaaatattaacaagtatcttttttgacttttactttcttcttttgccttccttaa 38616895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 39403042 - 39402997
Alignment:
Q  26 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaa 71  Q
    |||| |||||||  |||||||||||||||||||||| |||||||||    
T  39403042 ttttatattgaatcatgtgtaatcaatgcattaaaatcttaaaaaa 39402997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 4601446 - 4601355
Alignment:
Q  32 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcccgg 123  Q
    |||||||| |||||||||||||||||||||  ||||||| | ||| |||||| ||| |||||||||||||||||||||| || |||| ||||    
T  4601446 attgaaagttgtgtaatcaatgcattaaaaatttaaaaagtatcttttttgatttcaaatttcttcttttggcttccttcacaagtgtccgg 4601355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 7246625 - 7246531
Alignment:
Q  27 tttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 121  Q
    |||| ||||| || |||||||||||| ||||||||||||||||||| ||| |||| | ||  ||||||||||||| || ||||||||||||||||    
T  7246625 tttgcattgatagttgtgtaatcaatacattaaaagcttaaaaaatatcttttttaatttagaatttcttcttttagcatccttaactagtgccc 7246531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 33755704 - 33755629
Alignment:
Q  48 tcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcccgg 123  Q
    ||||||||||||||||||||||| ||||  |||||| ||  |||||| |||||||||||||||||| |||||||||    
T  33755704 tcaatgcattaaaagcttaaaaagtgtcatttttgagttaaaatttcctcttttggcttccttaaccagtgcccgg 33755629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 3435827 - 3435734
Alignment:
Q  20 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||||| |||| |||||||| | |||||||||||||||| || |||||||| ||||| |||||| ||  ||||||||||||| ||||| |||||    
T  3435827 agtaatatttgcattgaaagttatgtaatcaatgcattataaacttaaaaagtgtcttttttgatttataatttcttcttttagcttctttaac 3435734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 5583620 - 5583697
Alignment:
Q  36 aaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||| |||||||||||||||||||| ||||||||||| ||  |||| | ||  |||||  |||||| |||||||||||    
T  5583620 aaagttgtgtaatcaatgcattaaatgcttaaaaaatatcattttttatttaaaattttatctttttgcttccttaac 5583697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 20869362 - 20869456
Alignment:
Q  27 tttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 121  Q
    |||| |||||||| |||||||||||||||||||||||||||||| ||||  |||| | ||  |||||  |||||||||||||||||| |||||||    
T  20869362 tttgcattgaaagttgtgtaatcaatgcattaaaagcttaaaaagtgtcatttttaaattaaaattttctcttttggcttccttaaccagtgccc 20869456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 36784224 - 36784315
Alignment:
Q  22 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 113  Q
    |||| |||| |||||||| |||||||||||| ||||||||| ||||||| ||||  |||| ||||  | |||||||||||  ||||||||||    
T  36784224 taatatttgcattgaaagctgtgtaatcaatacattaaaagattaaaaagtgtcctttttaacttttactttcttcttttttcttccttaac 36784315  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 3425790 - 3425747
Alignment:
Q  78 ttttgacttccaatttcttcttttggcttccttaactagtgccc 121  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||    
T  3425790 ttttgactttcaatttcttcttttggctttcttaacgagtgccc 3425747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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