View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_44 (Length: 207)
Name: NF8379_low_44
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 50394619 - 50394440
Alignment:
| Q |
19 |
catttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394619 |
catttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgtt |
50394520 |
T |
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| Q |
119 |
gcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaattcaattcatgcccttctattctctgctt |
198 |
Q |
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| T |
50394519 |
gcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaattcaattcatgcccttctattctatgctt |
50394440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 50386200 - 50386021
Alignment:
| Q |
19 |
catttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgtt |
118 |
Q |
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||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50386200 |
catttcagcttcttccctatatctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgtt |
50386101 |
T |
|
| Q |
119 |
gcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaattcaattcatgcccttctattctctgctt |
198 |
Q |
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| T |
50386100 |
gcagctgtgataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctt |
50386021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 50391345 - 50391166
Alignment:
| Q |
19 |
catttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||| |
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| T |
50391345 |
catttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagtt |
50391246 |
T |
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| Q |
119 |
gcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaattcaattcatgcccttctattctctgctt |
198 |
Q |
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| T |
50391245 |
gcagctgcaataataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctt |
50391166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 19712372 - 19712425
Alignment:
| Q |
25 |
agcttcttctctgtacctcttgtatatgtcacctttgtaaaactttctagtcct |
78 |
Q |
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|||||| |||||| || ||||||||||||||||||| ||||||| ||||||||| |
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| T |
19712372 |
agcttcctctctgaacttcttgtatatgtcacctttataaaactctctagtcct |
19712425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 50408211 - 50408094
Alignment:
| Q |
37 |
gtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatg |
136 |
Q |
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||||||||||||||| |||||||| |||||||| | || || | ||| ||||||||||||| || |||||||| || || || || || ||||||||| |
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| T |
50408211 |
gtacctcttgtatatatcacctttataaaacttatttgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatg |
50408112 |
T |
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| Q |
137 |
aaagataacttgaaacaa |
154 |
Q |
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||||| || |||||||| |
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| T |
50408111 |
aaagacaatctgaaacaa |
50408094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 34297438 - 34297389
Alignment:
| Q |
133 |
aatgaaagataacttgaaacaatcaacaccaacacaattcaattcatgcc |
182 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
34297438 |
aatgaaagataacttcaaacaatcaacaccaatacaattcaattcatgcc |
34297389 |
T |
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