View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_6 (Length: 612)
Name: NF8379_low_6
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Complemental strand, 592686 - 592109
Alignment:
| Q |
18 |
agatggtggtgatacatttttatcacaatttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaa |
117 |
Q |
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| T |
592686 |
agatggtggtgatacattt--atcacaatgtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaa |
592589 |
T |
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| Q |
118 |
ttgaaaataaaattttacacttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtat |
217 |
Q |
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| T |
592588 |
ttgaaaataaaattttacactgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtat |
592489 |
T |
|
| Q |
218 |
aataatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctga |
317 |
Q |
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| T |
592488 |
aataatggtatcaaacttctgagacttgattgtttgttactttatgttgataattgtaaattcctctcttgcagctttctttggctgtgttgttttctca |
592389 |
T |
|
| Q |
318 |
aacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccag |
417 |
Q |
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| T |
592388 |
aacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccag |
592289 |
T |
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| Q |
418 |
tagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagtgttctc |
517 |
Q |
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| T |
592288 |
tagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataatggaatgcttccaatcagtgttctc |
592189 |
T |
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| Q |
518 |
ttcccatgcctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcat |
597 |
Q |
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| T |
592188 |
ttcccatgcctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcat |
592109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 55 - 597
Target Start/End: Original strand, 579785 - 580318
Alignment:
| Q |
55 |
tcatgtttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttgaattcat |
153 |
Q |
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| T |
579785 |
tcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt--------tgaaaataaaattttacactgcaacttgaattcat |
579875 |
T |
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| Q |
154 |
tatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttgg |
253 |
Q |
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| T |
579876 |
tatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctctgagacttgattgtttg |
579975 |
T |
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| Q |
254 |
ttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagt |
353 |
Q |
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| T |
579976 |
tttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgttattt-ctcaaacatgaaccaaatttacaggactatttctcaaagt |
580074 |
T |
|
| Q |
354 |
ggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagct |
453 |
Q |
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| T |
580075 |
ggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgtctcttgggtcgtgaagttcgtgacaagct |
580174 |
T |
|
| Q |
454 |
cttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagtgttctcttcccatgcctgccaattccggctcacaggcgccgt |
553 |
Q |
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| T |
580175 |
cttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcagtgttctcttcccatacctgccaattccggctcacaggcgccgt |
580274 |
T |
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| Q |
554 |
gacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcat |
597 |
Q |
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| T |
580275 |
gacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcat |
580318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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