View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_9 (Length: 498)
Name: NF8379_low_9
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 22 - 486
Target Start/End: Complemental strand, 49083424 - 49082962
Alignment:
| Q |
22 |
ataactaacaaaataagggcnnnnnnnttgaacaaaaatacaagataaaagaaagttatatacctccagtttcgtccttatactcagccgactccctttc |
121 |
Q |
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| T |
49083424 |
ataactaacaaaataagggcaaaaaaattgaacaaaaatacaagataaaagaaagttatatacctccagttacgtccttatactcagccgactccctttc |
49083325 |
T |
|
| Q |
122 |
atatttgatagaattatcctgcatattttccatgtatttactatcagcttcagaaaatggtgatgtagaagtgaagatactttgcacaaaagagttgcca |
221 |
Q |
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| T |
49083324 |
atatttgatagaattatcctgcatattttccatgtatttactatcagcttcagaaaatggtgatgtagaagtgaagatactttgcacaa--gagttgcca |
49083227 |
T |
|
| Q |
222 |
gtttctatgttnnnnnnnggaaattttcctcaagtttgcaggagagtgagtggctttgtatatgttaccgaagccagacattgaaagtgtaaatagaaca |
321 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49083226 |
gtttctatgttaaaaaaaggaaattttcctcaagtttgcaggagagtgagtggctttgtatatgttaccgaagccagacattgaaagtgtaaatagaata |
49083127 |
T |
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| Q |
322 |
ttaataatgaaatccgctgaggtaaaagttagctgttgtttcacaactaacagtctgaaactgacatatctaacaatcctattacactgcttcagtgaaa |
421 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49083126 |
ttaataatgaaatccgctgaggtaaaagttaactgttgtttcacaactaacagtctgaaactgacatatctaacaatcctattacactgcttcagtgaaa |
49083027 |
T |
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| Q |
422 |
tttagatggcgtgcataggcaaaacttacatgaggctcactannnnnnncactgcattcaatatt |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49083026 |
tttagatggcgtgcataggcaaaacttacatgaggctcactatttttttcactgcattcaatatt |
49082962 |
T |
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