View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8380_high_3 (Length: 311)
Name: NF8380_high_3
Description: NF8380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8380_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 3544112 - 3543835
Alignment:
| Q |
16 |
aactccatctgtctctcctactcaattaacacattgttctctttcccactaacacacaccaccacactttctctcttcaaatttcatacttttctaaccg |
115 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544112 |
aactccaactgtctctcccactcaattaacacattgttctctttcacacaaacacacaccaccacactttctctcttcaaatttcatacttttctaacca |
3544013 |
T |
|
| Q |
116 |
cataaaattatactattctctcatgtccacagccgagccaccatcttccaccaccatcactacaaccggcgtaggtctcggctacggcatcacaatcgcc |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544012 |
caaaaaattatactattctctcatgtccacagccgagccaccatcttccaccaccatcactacaaccggcgtaggtctcggctacggcatcacaatcgcc |
3543913 |
T |
|
| Q |
216 |
gtaagcatccttgtcctcatctccaccatcatgctcgtttcctacctctgcgtccgtataaaatcacaaggacgcaga |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
3543912 |
gtaagcatccttgtcctcatctccaccatcatgctcgtttcctacctttgcgtccgtataaaatcacacggacgcaga |
3543835 |
T |
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