View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8380_low_10 (Length: 243)
Name: NF8380_low_10
Description: NF8380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8380_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 39839644 - 39839480
Alignment:
| Q |
61 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39839644 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39839545 |
T |
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| Q |
161 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttct |
225 |
Q |
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| T |
39839544 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttct |
39839480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 39733314 - 39733478
Alignment:
| Q |
61 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39733314 |
cacaaaagttaaaaaagaattactatgaagcactgacacatataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39733413 |
T |
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| Q |
161 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttct |
225 |
Q |
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| T |
39733414 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttct |
39733478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 29857435 - 29857535
Alignment:
| Q |
125 |
taccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttc |
224 |
Q |
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|||||||||||||| ||| || |||||| | |||| |||||||| ||||||||| || ||||||||||||||||| ||||| |||||||| | ||||||| |
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| T |
29857435 |
taccgagctacgaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttc |
29857534 |
T |
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| Q |
225 |
t |
225 |
Q |
| |
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| |
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|
| T |
29857535 |
t |
29857535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 17408175 - 17408125
Alignment:
| Q |
170 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaac |
220 |
Q |
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||||||||| || | |||||| ||||||||||||||||||||||||||||| |
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| T |
17408175 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaac |
17408125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 19040190 - 19040219
Alignment:
| Q |
80 |
ttactatgaagcactgacacagataccaga |
109 |
Q |
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| T |
19040190 |
ttactatgaagcactgacacagataccaga |
19040219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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