View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8380_low_7 (Length: 268)
Name: NF8380_low_7
Description: NF8380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8380_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 3187151 - 3187389
Alignment:
| Q |
19 |
acattaaacattataaaacaaacagcactactatgttccattatctatttatctccacaaacaagacatgtagctacttggtgccttgagattgattctt |
118 |
Q |
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| T |
3187151 |
acattaaacattataaaacaaacagcactactatgttccattatctatttatctccacaaacaagacatgtagctacttggtgccttgagattgattctt |
3187250 |
T |
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| Q |
119 |
tatttggaaaatagaacataacaactagtagctacttggtaatcttcgcacaagtaatttacaactaccttccattatacatttcattgcaatatgtact |
218 |
Q |
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| T |
3187251 |
tatttggaaaatagaacttaacaactagtagctacatggtaatcttcgcacaagtgatttacaactaccttctattatacattgcattgcaatatgtact |
3187350 |
T |
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| Q |
219 |
atcatttctagattttccccctttttatcagggattctt |
257 |
Q |
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| T |
3187351 |
atcatttctagattttccccctttttatcagggattctt |
3187389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 52801114 - 52801346
Alignment:
| Q |
25 |
aacattataaaacaaacagcactactatgttccattatctatttatctccacaaacaagacatgtagctacttggtgccttgagattgattctttatttg |
124 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52801114 |
aacattataaaacaaacagcgctactatgttccattgtctatttatctccacaaacaagacatgtagctacttggtgccttgagattgattctttatttg |
52801213 |
T |
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| Q |
125 |
gaaaatagaacataacaactagtagctacttggtaatcttcgcacaagtaatttacaactaccttccattatacatttcattgcaatatgtactatcatt |
224 |
Q |
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| T |
52801214 |
gaaaatagaacttaacaactagtagctacttggtaatcttcgcacaagtgatttacgactaccttctattatacatttcattgcaatatgtactatcatt |
52801313 |
T |
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| Q |
225 |
tctagattttccccctttttatcagggattctt |
257 |
Q |
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| T |
52801314 |
tctagattttccccctttttatcagggattctt |
52801346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 18886616 - 18886384
Alignment:
| Q |
19 |
acattaaacattataaaacaaacagcactactatgttccattatctatttatctccacaaacaagacatgtagctacttggtgccttgagattgattctt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
18886616 |
acattaaacataataaaacaaacagcactactatgttccattgtccgtctatctccacaaacaagacatgtagctgcttgttgccttgagattgattctt |
18886517 |
T |
|
| Q |
119 |
tatttggaaaatagaacataacaactagtagctacttggtaatcttcgcacaagtaatttacaactaccttccattatacatttcattgcaatatgtact |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||| |
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| T |
18886516 |
tatttggaaaatagaacttaacaactagtagctacttggtaatcttcgcacaagtgatttataactaccttctattatacattttattgcaatatgtact |
18886417 |
T |
|
| Q |
219 |
atcatttctagattttccccctttttatcaggg |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
18886416 |
atcatttctagattttccccctttttatcaggg |
18886384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 3917531 - 3917373
Alignment:
| Q |
99 |
gtgccttgagattgattctttatttggaaaatagaacataacaactagtagctacttggtaatcttcgcacaagtaatttacaactaccttccattatac |
198 |
Q |
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|||||||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3917531 |
gtgccttgagattgattctttattcggaaaatagaacttgacaactagtagctccttggtaatcttcgcacaagtgatttacaactaccttctattatac |
3917432 |
T |
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| Q |
199 |
atttcattgcaatatgtacta-tcatttctagattttccccctttttatcagggattctt |
257 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |
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| T |
3917431 |
atttcattgcaatatgtactattcatttctagattttccccc-ttttatcagagattctt |
3917373 |
T |
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