View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8380_low_8 (Length: 250)
Name: NF8380_low_8
Description: NF8380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8380_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4201184 - 4200936
Alignment:
| Q |
1 |
ctgccaaacccgtgtaccaataatgtctaaaatgtaaccactataataatgagatggtagaaactaaaaagtgaaaactatc-----atgtgatgtgaag |
95 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
4201184 |
ctgccaaacccgtgtaccaataatgtgtaaaatgtaaccactataataatgagatggtagaaaataaaaagtgaaaactatcgtgtggtgtgatgtgaag |
4201085 |
T |
|
| Q |
96 |
tgtgtgggtaaaaatgcatcatctcacaacttggattgcaacaaattttttagcccataattgggcctaataatgatatt-aggcctaataattgaattg |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||| | || | ||||||||||||||||| |
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| T |
4201084 |
tgtgtgggtaaaaatgcatcatctcacaacttggattgcaacaaaaattttggcccatatttttctctaatactccccttcatgcctaataattgaattg |
4200985 |
T |
|
| Q |
195 |
tattattttcctactattttagaatttgagttgagttaaattcatctca |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4200984 |
tattattttcctactattttagaatttgagttgagttaaattcatctca |
4200936 |
T |
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