View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8381_high_10 (Length: 240)

Name: NF8381_high_10
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8381_high_10
NF8381_high_10
[»] chr8 (3 HSPs)
chr8 (20-220)||(33834344-33834546)
chr8 (20-65)||(13150156-13150201)
chr8 (20-76)||(15898976-15899032)
[»] chr7 (3 HSPs)
chr7 (20-66)||(1787165-1787211)
chr7 (20-76)||(8036374-8036430)
chr7 (20-76)||(15646937-15646993)
[»] chr3 (6 HSPs)
chr3 (20-76)||(54768152-54768208)
chr3 (20-76)||(5530821-5530877)
chr3 (20-76)||(21091783-21091839)
chr3 (32-76)||(14266013-14266057)
chr3 (20-76)||(35379574-35379630)
chr3 (20-76)||(38277553-38277609)
[»] chr2 (2 HSPs)
chr2 (20-76)||(11653168-11653224)
chr2 (20-76)||(21885137-21885193)
[»] chr5 (1 HSPs)
chr5 (20-76)||(28766499-28766555)
[»] chr4 (5 HSPs)
chr4 (32-76)||(53353002-53353046)
chr4 (21-63)||(23775366-23775408)
chr4 (24-65)||(2548635-2548676)
chr4 (20-76)||(20702733-20702789)
chr4 (20-76)||(35519281-35519337)
[»] chr1 (3 HSPs)
chr1 (20-76)||(38619438-38619494)
chr1 (20-58)||(46880228-46880266)
chr1 (22-67)||(33194105-33194150)
[»] scaffold0268 (1 HSPs)
scaffold0268 (32-76)||(21430-21474)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 33834344 - 33834546
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatcttttagcagtattgataaaggagttaaaggaagtgannnnnnnnn-- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||               
T  33834344 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcgcatcttttagcagtattgataaaggagttaagggaagtgattttttttttt 33834443  T
Q  118 aacaaaccttgtggttggtcttggaccaatccccaacaagcagggtgaattctccatcaggggcaggatatggaatggctatagtagacctttgagcaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33834444 aacaaaccttgtggttggtcttggaccaatccccaacaagcagggtgaattctccatcaggggcaggatatggaatggctatagtagacctttgagcaat 33834543  T
Q  218 att 220  Q
    |||    
T  33834544 att 33834546  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 13150156 - 13150201
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagt 65  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||    
T  13150156 tcaaacgttaacgcaataaaaagagcggaaagacggacacgtgagt 13150201  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 15898976 - 15899032
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    |||||||||| |||||  |||| ||||||||||||||||||||||||| | ||||||    
T  15898976 tcaaacgttagtgcaacaaaaagagcggaaagacggacacgtgagtgcccgtctttt 15899032  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 1787165 - 1787211
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtg 66  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  1787165 tcaaacgttaacgcaattaaaagagcggaaagacggacacgtgagtg 1787211  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 8036430 - 8036374
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||| | ||| |||| ||| ||||||| ||||||||||||||| ||||||    
T  8036430 tcaaacgttaacgtaataaaaagagcagaaagacagacacgtgagtgcacgtctttt 8036374  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 15646993 - 15646937
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||  ||||| |||| ||||||||||||| ||||||||||| | ||||||    
T  15646993 tcaaacgttagcgcaataaaaagagcggaaagacgggcacgtgagtgctcgtctttt 15646937  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 54768152 - 54768208
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||||||||| |||| |||| |||||| ||||||||||||| ||||||||    
T  54768152 tcaaacgttaatgcaataaaaagagcgaaaagacagacacgtgagtgcccatctttt 54768208  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 5530821 - 5530877
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||||||||| |||| ||| ||||||||| |||||||||||  |||||||    
T  5530821 tcaaacgttaatgcaataaaaagagcagaaagacgggcacgtgagtgccgatctttt 5530877  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 21091839 - 21091783
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    |||||||||| |||||| |||| || |||||||||||||||||||||  ||||||||    
T  21091839 tcaaacgttagtgcaataaaaagagaggaaagacggacacgtgagtgtccatctttt 21091783  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 14266013 - 14266057
Alignment:
Q  32 gcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||| |||| ||||||||||||||||||||||||| | ||||||    
T  14266013 gcaataaaaagagcggaaagacggacacgtgagtgcccttctttt 14266057  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 35379574 - 35379630
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||  ||||| |||| |||||||||||||||||||| || | ||||||||    
T  35379574 tcaaacgttagcgcaataaaaagagcggaaagacggacacgtgggtacccatctttt 35379630  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 38277609 - 38277553
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||||| | | |||| |||||||||||| |||||||||||| | ||||||    
T  38277609 tcaaacgttaatgtagtaaaaagagcggaaagacgaacacgtgagtgcccgtctttt 38277553  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 11653168 - 11653224
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||| ||||| |||||||| ||||||| ||||||||||||| ||||||||    
T  11653168 tcaaacgttaacgcaataaaaaaagcagaaagacagacacgtgagtgcccatctttt 11653224  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 21885193 - 21885137
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||  ||||| |||| ||| ||||||||| ||||||||||| ||||||||    
T  21885193 tcaaacgttagagcaataaaaagagcagaaagacgggcacgtgagtgcccatctttt 21885137  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 28766499 - 28766555
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||| ||||||||||| |||| ||||||||||||| ||| ||||||| ||||||||    
T  28766499 tcaaaagttaatgcaataaaaagagcggaaagacgggcacatgagtgcccatctttt 28766555  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 53353046 - 53353002
Alignment:
Q  32 gcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||    
T  53353046 gcaataaaaaaagcggaaagatggacacgtgagtgcccatctttt 53353002  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 23775408 - 23775366
Alignment:
Q  21 caaacgttaatgcaattaaaaaagcggaaagacggacacgtga 63  Q
    |||| ||||||||||| |||| |||||||||||||||||||||    
T  23775408 caaaggttaatgcaataaaaagagcggaaagacggacacgtga 23775366  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 2548635 - 2548676
Alignment:
Q  24 acgttaatgcaattaaaaaagcggaaagacggacacgtgagt 65  Q
    ||||||||||||  |||| |||||||||||||||||||||||    
T  2548635 acgttaatgcaacaaaaagagcggaaagacggacacgtgagt 2548676  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 20702733 - 20702789
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||||||||  ||||| |||| ||||||||||||| ||||||||||| | ||||||    
T  20702733 tcaaacgttagcgcaataaaaagagcggaaagacgggcacgtgagtgcccgtctttt 20702789  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 35519281 - 35519337
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    |||||||||||  |||| |||| |||||||||||||||| |||||||| | ||||||    
T  35519281 tcaaacgttaacacaataaaaagagcggaaagacggacatgtgagtgcccgtctttt 35519337  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 38619494 - 38619438
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    |||||| |||| ||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  38619494 tcaaaccttaacgcaataaaaagagcggaaagacggacacgtgaatgcccatctttt 38619438  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 46880228 - 46880266
Alignment:
Q  20 tcaaacgttaatgcaattaaaaaagcggaaagacggaca 58  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  46880228 tcaaacgttaatgcaataaaaagagcggaaagacggaca 46880266  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 33194105 - 33194150
Alignment:
Q  22 aaacgttaatgcaattaaaaaagcggaaagacggacacgtgagtgc 67  Q
    ||||||||| ||||| |||| |||||||||| ||||||||||||||    
T  33194105 aaacgttaacgcaataaaaagagcggaaagaaggacacgtgagtgc 33194150  T

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Target: scaffold0268 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 21430 - 21474
Alignment:
Q  32 gcaattaaaaaagcggaaagacggacacgtgagtgcacatctttt 76  Q
    ||||| |||| |||||||||||||||||| |||||| ||||||||    
T  21430 gcaataaaaagagcggaaagacggacacgcgagtgcccatctttt 21474  T

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