View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_high_2 (Length: 465)
Name: NF8381_high_2
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 26583658 - 26583212
Alignment:
| Q |
1 |
agtggtgagaaaggctattttcaaagcattggaaaatttgaaaggtaatgcaaataaatgcagtttatgtatcaatagcaataaagactatcaaactgtg |
100 |
Q |
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| T |
26583658 |
agtggtgagaaaggctattttcaaagcattggaaaatttgaaaggtaatgcaaataaatgcagtttatgtatcaatagcaataaagactatcaaactgtg |
26583559 |
T |
|
| Q |
101 |
gcaacagttagtttgttgaaagaggttgaaatgattacattttctttatttgaatcattgttgatttttatgtgtggaacacaatcaaagaggagtagtt |
200 |
Q |
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| T |
26583558 |
gcaacagttagtttgttgaaagaggttgaaatgattacattttctttatttgaatcattgttgatttttatgtgtggaacacaatcaaagaggagtagtt |
26583459 |
T |
|
| Q |
201 |
ggtctttggtatcaaagctaatgaatagcaaaaaggtatcaaactcattatcacaaggtgaagatgagaatgagtttgcaaaagtggacactgctttgga |
300 |
Q |
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| T |
26583458 |
ggtctttggtatcaaagctaatgaatagcaaaaaggtatcaaactcattatcacaaggtgaagatgagaatgagtttgcaaaagtggacactgctttgga |
26583359 |
T |
|
| Q |
301 |
attctttgcattcaacatgggaagcaagtcaagtgacattgaaaatttgcaaaataagttggtgaatttaggatcatgcatacaagatcttgaagaagga |
400 |
Q |
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| T |
26583358 |
attctttgcattcaacatgagaagcaagtcaagtgacattgaaaatttgcaaaataagttggtgaatttaggatcatgcatacaagatcttgaagaagga |
26583259 |
T |
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| Q |
401 |
cttgaatctttgtttaggcgtttgattaaaatcagagttgcccttct |
447 |
Q |
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| T |
26583258 |
cttgaatctttgtttaggcgtttgattaaaatcagagttgcccttct |
26583212 |
T |
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