View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8381_low_1 (Length: 600)

Name: NF8381_low_1
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8381_low_1
NF8381_low_1
[»] chr3 (13 HSPs)
chr3 (14-600)||(27046324-27046909)
chr3 (18-308)||(27086741-27087030)
chr3 (18-317)||(27042584-27042888)
chr3 (66-290)||(27100245-27100468)
chr3 (66-290)||(27106752-27106975)
chr3 (479-598)||(27086385-27086504)
chr3 (475-598)||(27041907-27042030)
chr3 (73-290)||(27064522-27064738)
chr3 (73-290)||(27071488-27071707)
chr3 (73-290)||(27044549-27044768)
chr3 (73-147)||(27092429-27092503)
chr3 (316-350)||(27042044-27042078)
chr3 (18-60)||(27047406-27047448)
[»] chr6 (1 HSPs)
chr6 (236-290)||(19417370-19417424)
[»] chr4 (3 HSPs)
chr4 (234-287)||(20065258-20065311)
chr4 (241-287)||(20051414-20051460)
chr4 (239-287)||(20060388-20060436)


Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 14 - 600
Target Start/End: Complemental strand, 27046909 - 27046324
Alignment:
Q  14 attattctcatcattttccattatggcgtatcagaaagaatccctaaacctagaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttct 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27046909 attattctcatcattttccattatggcgtatcagaaagaacccctaaacctagaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttct 27046810  T
Q  114 tgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagctgttcatgtataccggccatcaacaattcatgattctgatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27046809 tgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagctgttcatgtataccggccatcaacaattcatgattctgatt 27046710  T
Q  214 cgggtttcgaccccttgtcatgtattcaaagaagcactctcaaaggctttggattattattatcctcttgcaggtatgcttgtaaaaaagaaattttata 313  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27046709 cgggtttcgaccc-ttgtcatgtattcaaagaagcactctcaaaggctttggattattattatcctcttgcaggtatacttgtaaaaaagaaattttata 27046611  T
Q  314 atgataaatgttactaatgatttgttatagcataaatttatgtgtttgtatccaaacaccgtttatttatttatttatgcttgtgaccatagaagaatgc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  27046610 atgataaatgttactaatgatttgttatagcataaatttatgtgtgtgtatccaaacaccgtttatttatttatttatgcttgtgatcatagaagaatgt 27046511  T
Q  414 ctcattaatgaatcatataggcacactttcttatatcttcaacttctatannnnnnncctcaaaccactaaaccaacttctcaatccgtttcccaggtag 513  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  27046510 ctcgttaatgaatcatataggctcactttcttatatcttcaacttctatatttttttcctcaaaccactaaaccaacttctcaatccgtttcccaggtag 27046411  T
Q  514 aatagtgagacatgccggagacggaagacttagagtcgagtttggttttgatggtgcagaatatggtgttccattcttagaagcaac 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  27046410 aatagtgagacatgccggagacggaagacttagagtcgagtttggtgttggtggtgcagaatatggtgttccattcttagaagcaac 27046324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 27087030 - 27086741
Alignment:
Q  18 ttctcatcattttccattatggcgtatcagaaagaatccctaaacctagaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgta 117  Q
    ||||||| |||||||| ||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27087030 ttctcattattttccaatatggcggatcagaaagcacccctaaagctagaaatgaaagatgttgtgcttgtaaaatcatccaagtccattccttcttgta 27086931  T
Q  118 ttctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagctgttcatgtataccggccatcaacaattcatgattctgattcggg 217  Q
    ||||||||||||||||||||||||||| | ||| |||| ||| ||||| || |  |||||||||||||||| ||||||||||||||||||||||||||||    
T  27086930 ttctttctctgtctacacttgacaatatatacatcaataatagcctttttctatttgttcatgtataccggtcatcaacaattcatgattctgattcggg 27086831  T
Q  218 tttcgaccccttgtcatgtattcaaagaagcactctcaaaggctttggattattattatcctcttgcaggtatgcttgtaaaaaagaaatt 308  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27086830 tttcga-cccttgtcatgtattcaaagaagcgctctcaaaggctttggattattattatcctcttgcaggtatacttgtaaaaaagaaatt 27086741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 27042888 - 27042584
Alignment:
Q  18 ttctcatcattttccattatggcgtatcagaaagaatccctaaaccta------gaaatgaaagatgttgtgcttgtaaaaccatccaagtccattcctt 111  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||      |||||||||||| |||| ||||||||||||||||||||||||||||    
T  27042888 ttctcatcattttccattatggcgtatcagaaagcacgcctaaacctaaagctagaaatgaaagatattgtacttgtaaaaccatccaagtccattcctt 27042789  T
Q  112 cttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagctgttcatgtataccggccatcaacaattcatgattctga 211  Q
    |||||||||| ||| |||||||||||||||||| | |||  ||| |||| ||||||||   |||||||||||||||| |||||||||| |||||||||||    
T  27042788 cttgtattctctctttgtctacacttgacaatatatacataaataataatctttgtcattttgttcatgtataccggtcatcaacaatacatgattctga 27042689  T
Q  212 ttcgggtttcgaccccttgtcatgtattcaaagaagcactctcaaaggctttggattattattatcctcttgcaggtatgcttgtaaaaaagaaatttta 311  Q
    ||| |||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27042688 ttcaggtttcca-ccctagtcatgtattcaaagaagcgctctcaaaggctttggattattattatcctcttgcaggtatacttgtaaaaaagaaatttta 27042590  T
Q  312 taatga 317  Q
    ||||||    
T  27042589 taatga 27042584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 27100468 - 27100245
Alignment:
Q  66 gaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataaccttt 165  Q
    ||||||||||||||||||||| |||||||||| || || ||||||||||||||||||||||| || ||| ||||||||| ||| | | || ||||||||     
T  27100468 gaaatgaaagatgttgtgcttataaaaccatcaaaatcaattccttcttgtattctttctctttccacaattgacaatagagaaatctataataaccttg 27100369  T
Q  166 gtcaagctgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagcactctcaaaggctttgg 265  Q
     |||| |||||||| |||| ||  || || ||||| |||||||||||| | ||||| | |  |||||||||||| ||||||||||||||||||||||||     
T  27100368 ctcaaactgttcatatatatcgatcaccatcaattaatgattctgatttgagtttc-aacttttgtcatgtatttaaagaagcactctcaaaggctttgt 27100270  T
Q  266 attattattatcctcttgcaggtat 290  Q
     ||||||||||||||||||||||||    
T  27100269 tttattattatcctcttgcaggtat 27100245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 27106975 - 27106752
Alignment:
Q  66 gaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataaccttt 165  Q
    ||||||||||| ||||| ||  |||||||||| || || |||||||||||||||||||| || |||||| ||||||||| ||| | | || ||||||||     
T  27106975 gaaatgaaagacgttgtactcataaaaccatcaaaatcaattccttcttgtattctttcactttctacaattgacaatagagaaatctataataaccttg 27106876  T
Q  166 gtcaagctgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagcactctcaaaggctttgg 265  Q
     |||| ||||||||||||||||  || || ||||| |||||||||||||| ||||| | |  |||||||||||||||||||||||| ||||| ||||||     
T  27106875 ctcaaactgttcatgtataccgatcaccatcaattaatgattctgattcgagtttc-aacttttgtcatgtattcaaagaagcactttcaaaagctttgt 27106777  T
Q  266 attattattatcctcttgcaggtat 290  Q
     ||||||||||||| ||||||||||    
T  27106776 tttattattatccttttgcaggtat 27106752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 479 - 598
Target Start/End: Complemental strand, 27086504 - 27086385
Alignment:
Q  479 cactaaaccaacttctcaatccgtttcccaggtagaatagtgagacatgccggagacggaagacttagagtcgagtttggttttgatggtgcagaatatg 578  Q
    |||||||||||||||||| ||| ||||||||||||| |||||| |||||| || ||||||||||||||||||||||||||| ||| || |||||||||||    
T  27086504 cactaaaccaacttctcactccatttcccaggtagactagtgaaacatgctggtgacggaagacttagagtcgagtttggtgttggtgatgcagaatatg 27086405  T
Q  579 gtgttccattcttagaagca 598  Q
    ||||||||||||||||||||    
T  27086404 gtgttccattcttagaagca 27086385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 475 - 598
Target Start/End: Complemental strand, 27042030 - 27041907
Alignment:
Q  475 aaaccactaaaccaacttctcaatccgtttcccaggtagaatagtgagacatgccggagacggaagacttagagtcgagtttggttttgatggtgcagaa 574  Q
    |||||||||||||||| ||||| | ||||||||||||||| |||||| |||||| || || |||||||||||||||||||||||| | | ||||||||||    
T  27042030 aaaccactaaaccaacatctcactgcgtttcccaggtagactagtgaaacatgctggtgatggaagacttagagtcgagtttggtctaggtggtgcagaa 27041931  T
Q  575 tatggtgttccattcttagaagca 598  Q
    ||||||||||||||||||||||||    
T  27041930 tatggtgttccattcttagaagca 27041907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 73 - 290
Target Start/End: Complemental strand, 27064738 - 27064522
Alignment:
Q  73 aagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagc 172  Q
    |||||||| |||||||||| ||||| || |||| | ||||||||||||||||||| || ||||||||||||||||    |||| ||||| ||   ||| |    
T  27064738 aagatgttttgcttgtaaagccatcaaaatccacttcttcttgtattctttctctatcaacacttgacaataaaggtgccaataataacattgcccaaac 27064639  T
Q  173 tgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagcactctcaaaggctttggattatta 272  Q
    |||||||||||||||  ||||| |||||||||||| ||||||  ||||| |||| |||||||||||||||||||||  | || |||||||||  ||| ||    
T  27064638 tgttcatgtataccgatcatcatcaattcatgattatgattccagtttcaaccc-ttgtcatgtattcaaagaagcgttgtccaaggctttgttttacta 27064540  T
Q  273 ttatcctcttgcaggtat 290  Q
    ||||||||| ||||||||    
T  27064539 ttatcctctagcaggtat 27064522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 73 - 290
Target Start/End: Complemental strand, 27071707 - 27071488
Alignment:
Q  73 aagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaag- 171  Q
    |||||||| |||||||||||||||| || |||| ||| |||||||||||||||||||| ||||||||||||||||    |||| |||| | ||||| ||     
T  27071707 aagatgttttgcttgtaaaaccatcaaaatccactccatcttgtattctttctctgtcaacacttgacaataaaggtgccaataataa-cattgtccaga 27071609  T
Q  172 ctgttcatgtataccg---gccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagcactctcaaaggctttggatt 268  Q
    | ||||||||||||||     ||||| |||||||||| | ||||||  ||||| | |||||||||| |||||||||||||  | || |||||||||  ||    
T  27071608 cagttcatgtataccgatcatcatcagcaattcatgactatgattccagtttc-aacccttgtcatatattcaaagaagcgttgtccaaggctttgtttt 27071510  T
Q  269 attattatcctcttgcaggtat 290  Q
    ||||||||||||| ||||||||    
T  27071509 attattatcctctagcaggtat 27071488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 73 - 290
Target Start/End: Complemental strand, 27044768 - 27044549
Alignment:
Q  73 aagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagc 172  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||||||||||| ||||||||  |||||||||    |||| ||||| ||   |||      
T  27044768 aagatgttttgcttgtaaaaccttcaaagtccactccttcttgtattctttctctatctacactgaacaataaaggtgccaataataacattgcccaaat 27044669  T
Q  173 tgttcatgtataccg---gccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagcactctcaaaggctttggatta 269  Q
    |||||||||||||||     ||||| |||||||||| | ||||||  ||||| | ||||||||||||||||||||||||  | || |||||||||  |||    
T  27044668 tgttcatgtataccgatcatcatcagcaattcatgactatgattccagtttc-aacccttgtcatgtattcaaagaagcgttgtcgaaggctttgtttta 27044570  T
Q  270 ttattatcctcttgcaggtat 290  Q
     ||| ||||||| ||||||||    
T  27044569 ctataatcctctagcaggtat 27044549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 27092503 - 27092429
Alignment:
Q  73 aagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaag 147  Q
    |||||||| |||||||||| ||||| || |||| ||||||||||||||||||||| || ||||||||||||||||    
T  27092503 aagatgttttgcttgtaaagccatcaaaatccactccttcttgtattctttctctatcaacacttgacaataaag 27092429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 27042078 - 27042044
Alignment:
Q  316 gataaatgttactaatgatttgttatagcataaat 350  Q
    |||||||||||||||||| ||||||||||||||||    
T  27042078 gataaatgttactaatgaattgttatagcataaat 27042044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 27047448 - 27047406
Alignment:
Q  18 ttctcatcattttccattatggcgtatcagaaagaatccctaa 60  Q
    ||||||||||||||||||||||||||| |||||| | ||||||    
T  27047448 ttctcatcattttccattatggcgtatgagaaagcacccctaa 27047406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 19417424 - 19417370
Alignment:
Q  236 tattcaaagaagcactctcaaaggctttggattattattatcctcttgcaggtat 290  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  19417424 tattcaaagaagcactctcaaaggctttgtgtttttattatcctcttgcaggtat 19417370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 20065311 - 20065258
Alignment:
Q  234 tgtattcaaagaagcactctcaaaggctttggattattattatcctcttgcagg 287  Q
    |||| ||||||||||||||||||| |||||||  || |||||||||||||||||    
T  20065311 tgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcagg 20065258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 20051460 - 20051414
Alignment:
Q  241 aaagaagcactctcaaaggctttggattattattatcctcttgcagg 287  Q
    |||||| | |||||||||||||||| ||| |||||||||||||||||    
T  20051460 aaagaatccctctcaaaggctttggtttactattatcctcttgcagg 20051414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 20060436 - 20060388
Alignment:
Q  239 tcaaagaagcactctcaaaggctttggattattattatcctcttgcagg 287  Q
    |||||||||||| |||||||| ||||| |||  ||||||||||||||||    
T  20060436 tcaaagaagcaccctcaaaggttttggtttacaattatcctcttgcagg 20060388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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