View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8381_low_10 (Length: 376)
Name: NF8381_low_10
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 28 - 330
Target Start/End: Complemental strand, 27046347 - 27046045
Alignment:
| Q |
28 |
tggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046347 |
tggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgat |
27046248 |
T |
|
| Q |
128 |
gttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgttt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27046247 |
gttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgttt |
27046148 |
T |
|
| Q |
228 |
gtgatggatatggttcaattcaagtcttcaatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagagagact |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27046147 |
gtgatggatatggttcaattcaagtcttcaaagcaattattgaacttgtaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagagagact |
27046048 |
T |
|
| Q |
328 |
agt |
330 |
Q |
| |
|
||| |
|
|
| T |
27046047 |
agt |
27046045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 28 - 321
Target Start/End: Complemental strand, 27086406 - 27086113
Alignment:
| Q |
28 |
tggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgat |
127 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
27086406 |
tggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagaaattgcaaaagacttggtgcttgat |
27086307 |
T |
|
| Q |
128 |
gttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgttt |
227 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||| || |||| | ||| |
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|
| T |
27086306 |
attccttctcctaaggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctattt |
27086207 |
T |
|
| Q |
228 |
gtgatggatatggttcaattcaagtcttcaatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagaga |
321 |
Q |
| |
|
|||| |||| ||| || ||| |||||| |||||| |||||||||||| |||||||| |||||| || |||| |||||||||||||||||| |
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|
| T |
27086206 |
gtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttgcaagaggaagaactgagccatcagtgaaacctgtgtgggaaagaga |
27086113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 28 - 321
Target Start/End: Complemental strand, 27041928 - 27041635
Alignment:
| Q |
28 |
tggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgat |
127 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
27041928 |
tggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagaaattgcaaaagacttggtgcttgat |
27041829 |
T |
|
| Q |
128 |
gttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgttt |
227 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||| || |||| | ||| |
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|
| T |
27041828 |
attccttctcctaaggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctattt |
27041729 |
T |
|
| Q |
228 |
gtgatggatatggttcaattcaagtcttcaatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagaga |
321 |
Q |
| |
|
|||| |||| ||| || ||| |||||| |||||| ||||||||| || ||||||| |||||| || |||| |||||||||||||||||| |
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|
| T |
27041728 |
gtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcagtgaaacctgtgtgggaaagaga |
27041635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 26 - 321
Target Start/End: Complemental strand, 27063279 - 27062984
Alignment:
| Q |
26 |
tttggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttg |
125 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||| | |||||||||| |
|
|
| T |
27063279 |
tttggcgttccgttcttggaagcaactgctaactgcacactttcttctcttcattacctggacaatactaacacagaaattgcaaaacatttggtgcttg |
27063180 |
T |
|
| Q |
126 |
atgttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgt |
225 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||| ||||||| | | |
|
|
| T |
27063179 |
atcttccttctcctcaagataaaaattaccctttggtgttaatggtgacgaaatttctttgtggtggtttcacaattggaatggggatgtcacatgctat |
27063080 |
T |
|
| Q |
226 |
ttgtgatggatatggttcaattcaagtcttcaatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagaga |
321 |
Q |
| |
|
|||||| |||| ||| || ||| ||||||| |||||| |||||||||||| |||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
27063079 |
ttgtgacggatttggcgcatcacaattcttcaaagcaattcttgaacttgcaagaggaagaaccgagccatcagtgaaacctgtgtgggaaagaga |
27062984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 321
Target Start/End: Complemental strand, 27070352 - 27070057
Alignment:
| Q |
26 |
tttggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttg |
125 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||||||| ||||||||||| |||| || ||||||||| | |||||||||| |
|
|
| T |
27070352 |
tttggcgttccgttcttggaagcaactgctaactgcacactttcttcccttcattacctggacaatactaacactgaaattgcaaaacatttggtgcttg |
27070253 |
T |
|
| Q |
126 |
atgttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgt |
225 |
Q |
| |
|
|| ||||| ||||||| |||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||| ||||||| | | |
|
|
| T |
27070252 |
attttcctactcctcaggataaaaattaccctttggtgttaatggtgacaaaatttctctgtggtggtttcacaattggaatggggatgtcacatgctat |
27070153 |
T |
|
| Q |
226 |
ttgtgatggatatggttcaattcaagtcttcaatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagaga |
321 |
Q |
| |
|
|||||| |||| |||| || ||| ||||||| ||| || |||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
27070152 |
ttgtgacggatttggtgcatcacaattcttcaaagcagttgttgaacttgcaagaggaagaactgagccatctgtgaaacctgtgtgggaaagaga |
27070057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 327
Target Start/End: Complemental strand, 27099063 - 27098773
Alignment:
| Q |
28 |
tggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgat |
127 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||||| | ||||||||||| |
|
|
| T |
27099063 |
tggtgttccattcttggaagcaattgctaactgcaccctttcttctattaattacttggacaataccgacacagaaattgcaaaacatttggtgcttga- |
27098965 |
T |
|
| Q |
128 |
gttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaat-ggggtgttcacatgttgtt |
226 |
Q |
| |
|
||| |||| ||| |||||||||||| |||| ||||||||||||| ||||||| |||||||| || ||||| |||||||| || | | | |
|
|
| T |
27098964 |
--------tcccgaagagaaagcttaccctttggtgttcaaggtgacaaaatttctttgtggaggtttcacgatcggaatgggggtgtt-gcacgctatc |
27098874 |
T |
|
| Q |
227 |
tgtgatggatatggttcaattcaagtcttcaatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagagagac |
326 |
Q |
| |
|
||||| ||| |||| || |||| ||||||| || || ||||||||||||| ||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
27098873 |
tgtgacggagttggtgcatctcaattcttcaaagcgatcattgaacttgcaaggggaagaaatgagccctcgaagatacctgtgtgggaaagagagagac |
27098774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 327
Target Start/End: Complemental strand, 27106062 - 27105772
Alignment:
| Q |
28 |
tggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgat |
127 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||||| | |||||||| | |
|
|
| T |
27106062 |
tggtgttccattcttggaagcaagtgctaactgcaccctttcttctattaattacttggacaataccgacacagaaattgcaaaacaactggtgcttaa- |
27105964 |
T |
|
| Q |
128 |
gttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaat-ggggtgttcacatgttgtt |
226 |
Q |
| |
|
|||| |||| |||| |||||||||||| |||| ||||||||||||| |||||| ||||||||||| ||||| |||||| | || | | | |
|
|
| T |
27105963 |
--------tcctgaagacaaaacttaccctttggtgttcaaggtgacaaaatttcgttgtggaggtttcacaatcggaatgggggtgct-gcacgctatc |
27105873 |
T |
|
| Q |
227 |
tgtgatggatatggttcaattcaagtcttcaatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagagagac |
326 |
Q |
| |
|
||||| ||| |||| || |||| | ||||| || |||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
27105872 |
tgtgacggagttggtgcatctcaattattcaaagcgattattgaacttgcaagaggaagaaatgagccctcgacgatacctgtgtgggaaagagagagac |
27105773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 323
Target Start/End: Complemental strand, 19415082 - 19414785
Alignment:
| Q |
26 |
tttggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttg |
125 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||| |||| ||||||| |||||||||||||| | |||||||| | |||||| | |||||| ||| |
|
|
| T |
19415082 |
tttggagttccattcttggaagcaactgctaactgcagccttgattctcttaattacttggacaatgcagacacagaagtggcaaaacaattggtgtttg |
19414983 |
T |
|
| Q |
126 |
atgttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgt |
225 |
Q |
| |
|
|| |||||| ||||||||||| |||||| ||||| | ||||| ||| |||||||||||||||| | || ||||||||||||| ||||||| || |
|
|
| T |
19414982 |
atcctccttcccctcaagataagtgttacccattggtggtaatggtaacacaatttatttgtggtggcataaccattggaatggggttgtcacatgccgt |
19414883 |
T |
|
| Q |
226 |
ttgtgatggatatggttcaattcaagtcttcaatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagaga |
323 |
Q |
| |
|
||||||||||| |||| || |||| | |||||||||||| ||||| ||||||||||||||| ||||||| | || | |||| | ||||||||||||| |
|
|
| T |
19414882 |
ttgtgatggatttggtgcatctcaatttttcaatgcaattgttgaaattgcaaaaggaagaaatgagcctacggttaaacctatatgggaaagagaga |
19414785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 20065076 - 20064990
Alignment:
| Q |
155 |
cctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggt |
241 |
Q |
| |
|
|||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||| | |||||| |||||||||||| |||||| |
|
|
| T |
20065076 |
cctttggttttcaaggtgacaaagtttctttgtggtggtttcacaattggaatgggattgtcacatagtgtttgtgatggttatggt |
20064990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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