View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_11 (Length: 365)
Name: NF8381_low_11
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 847550 - 847891
Alignment:
| Q |
6 |
gcatttgagacaagacatttgggtttagcaaactttaaagcactgacataacggacagtaataatctgagaaaatgtacgtgatcaatgtaaccacatat |
105 |
Q |
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| T |
847550 |
gcatttgagacaagacatttgggtttaacaaactttaaagcaccggcataacggacagtaataatctgagaaaatgtacgtgatcaatgtaaccacatat |
847649 |
T |
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| Q |
106 |
gtcagtgtcacacaacggacacaccttcaatatgaagtgtcggtgctgcatagttagtaagtttttaatttagatccttattgaaaacttttgatggatc |
205 |
Q |
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| T |
847650 |
gtcagtg-cacacaacggacacaccttcaatatgaagtgtcggtgctgcatagttagtaaatttttaatttagatccttattgaaaacttttgatggatc |
847748 |
T |
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| Q |
206 |
ggtaagggtacagtgataggacacctgggccgagtccaatagtagaagtggctctcagaaagcccataatatggcaggtttatttttcattttctgctgt |
305 |
Q |
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| T |
847749 |
ggtaagggtacagtgataggacacctgggccgagtccaatagtagaagtggctctcagaaagcccataatatgccaggtttatttttcattttctgctgt |
847848 |
T |
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| Q |
306 |
aagagaatcttgttcaatttccatccaataaacatacggttcc |
348 |
Q |
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| T |
847849 |
aagagaatcttgttcaatttccatccaataaacatactgttcc |
847891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 439774 - 439698
Alignment:
| Q |
178 |
gatccttattgaaaacttttgatggatcggtaagggtacagtgataggacacctgggccgagtccaatagtagaagt |
254 |
Q |
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| T |
439774 |
gatccttatttaaaacttttaatggatcagtaagggtacagtaataggacacctggaccgagtacaatagtagaagt |
439698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 18512168 - 18512107
Alignment:
| Q |
89 |
tcaatgtaaccacatatgtcagtgtcacacaac-ggacacaccttcaatatgaagtgtcggt |
149 |
Q |
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| T |
18512168 |
tcaatgtaatcacatgtgtcagtgtcacacaccgggacacaccttcaatcagaagtgtcggt |
18512107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 8733574 - 8733520
Alignment:
| Q |
95 |
taaccacatatgtcagtgtcacacaacggacacaccttcaatatgaagtgtcggt |
149 |
Q |
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| T |
8733574 |
taaccacatgtgtcagtgtcagacaacgaacacactttgaatttgaagtgtcggt |
8733520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 41047942 - 41047995
Alignment:
| Q |
105 |
tgtcagtgtcacacaacggacacaccttcaatatgaagtgtcggtgctgcatag |
158 |
Q |
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| T |
41047942 |
tgtcaatgtcagacagcagacacaccttcaatgtgaagtgtcggtgctacatag |
41047995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 21135686 - 21135752
Alignment:
| Q |
96 |
aaccacatatgtcagtgtcacacaacggacacaccttcaatatgaagtgtcggtgctgcatagttag |
162 |
Q |
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| T |
21135686 |
aaccacatgtgtcggtgtcagacaccggacacaccattaatgtgaagtgtcggtgcaacatagttag |
21135752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 3154222 - 3154182
Alignment:
| Q |
110 |
gtgtcacacaacggacacaccttcaatatgaagtgtcggtg |
150 |
Q |
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| T |
3154222 |
gtgtcagacaacagacacaccttaaatatgaagtgtcggtg |
3154182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 7259169 - 7259141
Alignment:
| Q |
124 |
acacaccttcaatatgaagtgtcggtgct |
152 |
Q |
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| T |
7259169 |
acacaccttcaatatgaagtgtcggtgct |
7259141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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