View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_13 (Length: 350)
Name: NF8381_low_13
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 44817198 - 44816962
Alignment:
| Q |
1 |
atcaactcaatgacaataatattcttttacaaagaatcagatcttattgggaatatagcaattgagtacataaggaaaaggacatggattaaaaaataaa |
100 |
Q |
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| T |
44817198 |
atcaacccaatgacaataatattcttttacaaagaatcagatcttattgggaatatagcaattgagtacataaggaaaaggacatggattaaaaaataaa |
44817099 |
T |
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| Q |
101 |
atctatcgttatgactcccttatttagtttcaaaactgatactttacactttaaaagagtcatgctttgcataattagtgattgaagtcagagatagagt |
200 |
Q |
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| T |
44817098 |
atctatcgttatgactcccttatttagtttcaaaactgatactttacactttaaaagagtcatgctttgcataattagtgattcaagtcagagatagagt |
44816999 |
T |
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| Q |
201 |
tcataattaatgaaaactggttgctctacagatttat |
237 |
Q |
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| T |
44816998 |
tcataattaatgaaaactggttgctctacacatttat |
44816962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 44816935 - 44816859
Alignment:
| Q |
264 |
tacaataactttattacccagccacgttttttagtttattccataagtcatcttcgtcttctgatttctctgcttct |
340 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44816935 |
tacaataacattattacccagccacgttttttagtttattccataagtcatcttcgtcttctgatttctctggttct |
44816859 |
T |
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