View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_14 (Length: 342)
Name: NF8381_low_14
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 44968723 - 44969030
Alignment:
| Q |
19 |
caaaaccctttctccatttcaggcctctttttgcccctttcacatcccaatctcaatcacccgtagctattgatttatctaacgaagaatccaaaaggcg |
118 |
Q |
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| T |
44968723 |
caaaaccctttctccatttcaggcctccttttgcccctttcacgtcccaatctcaatcacccgtagttattaatttatctaacgaagaatccaaaaggcg |
44968822 |
T |
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| Q |
119 |
cttatttaacaggttctcctctttttaannnnnnnnnccccattttgattgggcttaacgttctttatttgtttgatttctcaatgctccataggttatt |
218 |
Q |
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| T |
44968823 |
cttatttaacaggttctcctctttttaatttttttt-ccccattttgattgggcttaacgttctttatttgtttgatttctcaatgctccataggttatt |
44968921 |
T |
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| Q |
219 |
atatagaagcaaacaacgcgggtttctggaactggacttggttcttggcaaatgggtagaggataatatccataaattggatgaaaatcggattaaagct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44968922 |
atatagaagcaaacaacgcgggtttctggaactggacttggttcttggcaaatgggtagaggataatatccataaattggatgaaaatcggattaaagct |
44969021 |
T |
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| Q |
319 |
ctcattcat |
327 |
Q |
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||||||||| |
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| T |
44969022 |
ctcattcat |
44969030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 40071303 - 40071384
Alignment:
| Q |
209 |
ataggttattatatagaagcaaacaacgcgggtttctggaactggacttggttcttggcaaatgggtagaggataatatcca |
290 |
Q |
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|||||||||| ||||||||||| ||||| |||||||| ||||| || |||||||||| ||||||||| || | |||||||| |
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| T |
40071303 |
ataggttattgtatagaagcaagcaacgagggtttctcgaactcgatctggttcttggaaaatgggtacagaacaatatcca |
40071384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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