View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_15 (Length: 332)
Name: NF8381_low_15
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 42071181 - 42071486
Alignment:
| Q |
19 |
tgattcctgtctcagcaatggcagggttggtcgaagatacactccctacaaatactaaggatcatgatgaatccaaacttcccattgcaggttacccttt |
118 |
Q |
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| T |
42071181 |
tgattcctgtctcagcaatggcagggttggtcgaagatacactccctacaaatactaaggatcatgatgaatccaaacttcccattgcaggttacccttt |
42071280 |
T |
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| Q |
119 |
acttctctcattattaattctagtaaagnnnnnnnnnnaattattgttatcattctataaggaataggatttgtaaatacaatggtgaagttagagtaat |
218 |
Q |
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| T |
42071281 |
acttctctcattattaattctagtaaagttttttttttaattattgttatcattctataaggaataggatttgtaaatacaatggtgaagttagagtaat |
42071380 |
T |
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| Q |
219 |
ttttttgagtgggtcaatttta-nnnnnnnnaaacttatataataagtttaaggactaaataattttgttttggagtaatcaaggataccctcgttatta |
317 |
Q |
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| T |
42071381 |
ttttttgagtgggccaattttatttttttttaaacttatataataagtttaagaactaaataattttgttttggagtaatcaaggatacccccgttatta |
42071480 |
T |
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| Q |
318 |
tatcat |
323 |
Q |
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|||||| |
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| T |
42071481 |
tatcat |
42071486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 42079413 - 42079513
Alignment:
| Q |
25 |
ctgtctcagcaatggcagggttggtcgaagatacactccctacaaatactaaggatcatgatgaatccaaacttcccattgcaggttaccctttacttct |
124 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
42079413 |
ctgtctcagcaatggcagggttggtcgaagatgcactccctgcccatactaaggatcatgatcaatccaaacttgccattgcaggttaccctttacttct |
42079512 |
T |
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| Q |
125 |
c |
125 |
Q |
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| T |
42079513 |
c |
42079513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 42055080 - 42055113
Alignment:
| Q |
81 |
catgatgaatccaaacttcccattgcaggttacc |
114 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
42055080 |
catgatgaatccaaacttgccattgcaggttacc |
42055113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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