View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8381_low_17 (Length: 327)
Name: NF8381_low_17
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 8963184 - 8963360
Alignment:
| Q |
19 |
atcacgccgttacagtgtacacactccgtgaagtgaagaaatggcagtgtagtaataacattaccaaaagaagggtatttacgtacttactagttcacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
8963184 |
atcacgccgttacagtgtacacactccgtgaagtgaagaaatggcagtgtagtaataacattaccaaaagaatggtatttacgtaattaccagttcacag |
8963283 |
T |
|
| Q |
119 |
cacatgcggccaaacacgacactgtacagaacagcaccgaaccgaaactgtgaacgatatgaagaaagagaaagaga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8963284 |
cacatgcggccaaacacgacactgtacagaacagcaccgaaccgaaactgtgaacgatatgaagaaagagagagaga |
8963360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 8963397 - 8963475
Alignment:
| Q |
238 |
gagtagagtggtgattcacagcaacaataaactgcaccttctcgcaaagcaatgtctgtcatcacctgaattctatgct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8963397 |
gagtagagtggtgattcacagcaacaataaactgcaccttctcgcaaagcaatgtctgtcatcacctgaattctatgct |
8963475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University