View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_22 (Length: 274)
Name: NF8381_low_22
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 15760881 - 15761131
Alignment:
| Q |
20 |
aaagcaaggatgtcatgtcaacaaagttagttttaacagaacgagtggatgatggatgtgagaagagatgcatgatgtaaggagtgagtatgaaagatat |
119 |
Q |
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| T |
15760881 |
aaagcaaggatgtcatgtcaacaaagttagttgtaacagaacgagtggatgatggatgtgaggagagatgcatgatgtaaggagtgagtatgaaagatat |
15760980 |
T |
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| Q |
120 |
tacattacgcaggcaaaggaagaaagttatgatatgaatgagtcaattccctttttgata-nnnnnnnnctatattccatt------ttctggagagttc |
212 |
Q |
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| T |
15760981 |
tacattacgcaggcaaaggaagaaagttatgatatgaatgagtcaaatccctttttgatatttctttttctatcttccattttattcttctggagagttc |
15761080 |
T |
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| Q |
213 |
tgtttatattcttcacgtgcctttaaacccataatgtattgtacgtgtgtg |
263 |
Q |
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| T |
15761081 |
tgtttctattcttcacgtgcttttaatcccctaatgtattgtacgtgtgtg |
15761131 |
T |
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