View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_24 (Length: 254)
Name: NF8381_low_24
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_24 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 24283924 - 24283684
Alignment:
| Q |
1 |
aggagtatcaataggcttaataatagccatttcaaacatcaatagaatcttctgaatatatctcttatgtgacacaagaaaagcttcttcggagttctat |
100 |
Q |
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| T |
24283924 |
aggagtatcaataggcttagcagtagccattccaaacctcgatagaatcttcttaatatatctcttatgtgaca--agaaaagcttcttcggagttctat |
24283827 |
T |
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| Q |
101 |
ccctgtagatctccattcccagaattttcttagtaacacccaactccttcatttccgattttgtactgagtagccccttaagattttcaaaatcagactt |
200 |
Q |
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| T |
24283826 |
ccatgtagatctccattcccataattttcttagtaacacccaaatccttcatttccaattatgtactgagtagccccttaagattttgaatatgagactt |
24283727 |
T |
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| Q |
201 |
cttctctgcaactagcaacatatcatcaacatacaacaccaaa |
243 |
Q |
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| T |
24283726 |
cttctctgcaactagcaacatatcatcaacagacaacaccaaa |
24283684 |
T |
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Target: scaffold0043 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 84653 - 84491
Alignment:
| Q |
79 |
aaaagcttcttcggagttctatccctgtagatctccattcccagaattttcttagtaacacccaactccttcatttccgattttgtactgagtagcccct |
178 |
Q |
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| T |
84653 |
aaaagcttcttcggtcttatatccctgtagatatccattccttgaattttcttagtagcatccaaatccttca-ttcaaattatgtactgagtagctcct |
84555 |
T |
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| Q |
179 |
taagattttcaaaatcagacttcttctctgcaactagcaacatatcatcaacatacaacaccaaa |
243 |
Q |
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| T |
84554 |
taagcttttgaatatcagactt-ttatctgcagctaggaagatgtcatctacgtacaacaacaaa |
84491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 18732108 - 18732011
Alignment:
| Q |
76 |
aagaaaagcttcttcggagttctatccctgtagatctccattcccagaattttcttagtaacacccaactccttcatttccgattttgtactgagtagc |
174 |
Q |
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||||||||||||||||| || ||||||||||||| |||||||| || ||||||||||| || |||| ||||||| ||| ||| ||||||||||||| |
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| T |
18732108 |
aagaaaagcttcttcggtcttatatccctgtagatatccattccttgagttttcttagtagcatccaaatccttca-ttcaaattatgtactgagtagc |
18732011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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