View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8381_low_3 (Length: 492)

Name: NF8381_low_3
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8381_low_3
NF8381_low_3
[»] chr4 (3 HSPs)
chr4 (19-470)||(32228012-32228462)
chr4 (236-470)||(12727254-12727488)
chr4 (35-89)||(12727634-12727688)
[»] chr5 (3 HSPs)
chr5 (22-470)||(41914708-41915154)
chr5 (227-467)||(6023800-6024040)
chr5 (19-89)||(6024177-6024247)
[»] chr8 (3 HSPs)
chr8 (250-470)||(25108653-25108873)
chr8 (43-85)||(25108467-25108509)
chr8 (32-80)||(42451393-42451441)
[»] chr1 (1 HSPs)
chr1 (231-467)||(32304129-32304365)
[»] chr2 (3 HSPs)
chr2 (250-470)||(40903142-40903362)
chr2 (36-85)||(40902928-40902977)
chr2 (32-80)||(40370107-40370155)
[»] chr6 (2 HSPs)
chr6 (32-85)||(19250333-19250386)
chr6 (401-485)||(21606520-21606604)
[»] chr7 (1 HSPs)
chr7 (32-80)||(13062559-13062607)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 32228462 - 32228012
Alignment:
Q  19 ttagtgaacagcagtccgacggatgagtttcctttagagcggggtcttcgtcagggtgaccccttgttgccnnnnnnnnnnnngctcactgttgagggtc 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||            |||||||| ||||||||    
T  32228462 ttagtgaacggcagtccgacggatgagtttcctttagagcggggtcttcgtcggtgtgatcccttgtcgccttttttatttttgctcactgctgagggtc 32228363  T
Q  119 taaatgtgctaatgactattgttgaaaggtcgcatctctttactgggtacggaatcggagccaatgctgaggttcggttgacgcgtttacagtttgcgaa 218  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  32228362 taaatgtgctaatgactacggttgaaaggtcgcatctctttactgggtacggaatcagagccaatgctgaggttcggttgacgcgtttacagtttacgaa 32228263  T
Q  219 tgcacgcgttaatcattggtgagaagagctagttgaacgttcgtacaatgaggtcggtgttgcttttatttggggagctttcgggtctcacaatgaattt 318  Q
    || || |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  32228262 tg-acacgttaatcattggtgagaagagctggttgaatgttcgtacaatgaggtcggggttgctttcatttggggagctttcgggtctcacaatgaattt 32228164  T
Q  319 tcacaaaattatgctgattggtgcaaacatccctgcttcctggttgtcagaggctgctatgatgatgagttgtcgcagaggtaccattccttttgtatat 418  Q
    |||||||| |||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  32228163 tcacaaaagtatgctcactggtgtaaacatccctgcttcctggttgtcagaggctactatgatgatgagttgttgcagaggtaccattccttttgtatat 32228064  T
Q  419 ttggagctgcctatcggaggtgattctagaaaaatctctttttggaaacctg 470  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32228063 ttgaagctgcctatcagaggtgattctagaaaaatctctttttggaaacctg 32228012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 470
Target Start/End: Complemental strand, 12727488 - 12727254
Alignment:
Q  236 ggtgagaagagctagttgaacgttcgtacaatgaggtcggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctga 335  Q
    ||||||||||||||||| ||  |||| |||||||| ||||||||| | ||||||| |||| | || ||||||| | ||||||| |||||||  ||| |||    
T  12727488 ggtgagaagagctagttaaatcttcgcacaatgagatcggtgttgttgttatttgaggagttgtcaggtctcaaagtgaatttccacaaaagcatgttga 12727389  T
Q  336 ttggtgcaaacatccctgcttcctggttgtcagaggctgctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcgg 435  Q
     || ||  || || || |  || ||||| |||||||| |||| | |||||| |||||| |||||| ||||||||||||| ||||| | ||||||||| ||    
T  12727388 ctgttgttaatattcccgtctcttggttatcagaggcggctaagttgatgaattgtcgaagaggtgccattccttttgtctatttagggctgcctatagg 12727289  T
Q  436 aggtgattctagaaaaatctctttttggaaacctg 470  Q
    |||||||||||||||| | ||||||||||||||||    
T  12727288 aggtgattctagaaaactttctttttggaaacctg 12727254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 12727688 - 12727634
Alignment:
Q  35 cgacggatgagtttcctttagagcggggtcttcgtcagggtgaccccttgttgcc 89  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||| |||    
T  12727688 cgacggatgagtttcctttagagcggggacttcgtcaaggtgaccctttgtcgcc 12727634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 470
Target Start/End: Complemental strand, 41915154 - 41914708
Alignment:
Q  22 gtgaacagcagtccgacggatgagtttcctttagagcggggtcttcgtcagggtgaccccttgttgccnnnnnnnnnnnngctcactgttgagggtctaa 121  Q
    |||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||            |||| ||  |||||||||||    
T  41915154 gtgaacggtagtccaacggatgagttccctttagagcggggtcttcgtcagggtgatcccttgtcgccttttttttttt-gctcgctactgagggtctaa 41915056  T
Q  122 atgtgctaatgactattgttgaaaggtcgcatctctttactgggtacggaatcggagccaatgctgaggttcggttgacgcgtttacagtttgcgaatgc 221  Q
    ||||||||||||||| |||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||     
T  41915055 atgtgctaatgactactgttgaaaggacacatctttttactgggtacagaatcggagccaatgctgaggttcggttgacgcatttacagtttgcggatg- 41914957  T
Q  222 acgcgttaatcattggtgagaagagctagttgaacgttcgtacaatgaggtcggtgttgcttttatttggggagctttcgggtctcacaatgaattttca 321  Q
    || |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41914956 acacgttaatcattggtgagaagagttggttgaacgttcgtacaatgaggtcggtgttgcttttatttggggagctttcgggtctcacagtgaattttca 41914857  T
Q  322 caaaattatgctgattggtgcaaacatccctgcttcctggttgtcagaggctgctatgatgatgagttgtcgcagaggtaccattccttttgtatatttg 421  Q
    ||||| |||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  41914856 caaaagtatgctgactggtgtaaatatctctgcttcctggttgtcagaggctgctatgatgatgagttgtcgtcgaggtaccattccttttgtatatttg 41914757  T
Q  422 gagctgcctatcggaggtgattctagaaaaatctctttttggaaacctg 470  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  41914756 gggctgcctatcggaggtgattctagaaaaatctctttttggaaacctg 41914708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 227 - 467
Target Start/End: Complemental strand, 6024040 - 6023800
Alignment:
Q  227 ttaatcattggtgagaagagctagttgaacgttcgtacaatgaggtcggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaa 326  Q
    ||||| |||||||| || |||| |||||| |||||||||||||||||||||||||||||||||| |||| | || ||||| | | | ||||||||||| |    
T  6024040 ttaataattggtgaaaaaagctggttgaatgttcgtacaatgaggtcggtgttgcttttatttgaggagatgtcaggtctaaaagtaaattttcacaaga 6023941  T
Q  327 ttatgctgattggtgcaaacatccctgcttcctggttgtcagaggctgctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagct 426  Q
     |||| ||| |||||  || |||| || ||| |||||||||||||| ||||||||||| | |||||| ||||||||||| |||||||| ||||||| |||    
T  6023940 gtatgttgactggtgtgaatatccatgtttcttggttgtcagaggcggctatgatgattaattgtcgaagaggtaccatcccttttgtctatttggggct 6023841  T
Q  427 gcctatcggaggtgattctagaaaaatctctttttggaaac 467  Q
    ||||||||||||||||||||  ||| |||||||||||||||    
T  6023840 gcctatcggaggtgattctaagaaactctctttttggaaac 6023800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 6024247 - 6024177
Alignment:
Q  19 ttagtgaacagcagtccgacggatgagtttcctttagagcggggtcttcgtcagggtgaccccttgttgcc 89  Q
    ||||||||  |||||||||| ||||| ||||||||||||| ||| ||||| ||||| ||||| || |||||    
T  6024247 ttagtgaatggcagtccgacagatgactttcctttagagcagggacttcgccagggcgaccctttattgcc 6024177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 250 - 470
Target Start/End: Original strand, 25108653 - 25108873
Alignment:
Q  250 gttgaacgttcgtacaatgaggtcggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctgattggtgcaaacatc 349  Q
    |||||| ||||||||||||| ||||||||||||||||| || ||| || |||||||||| | | ||||||||||| | |||| ||| ||||| ||| ||     
T  25108653 gttgaatgttcgtacaatgaagtcggtgttgcttttatctgaggaactgtcgggtctcaaagtaaattttcacaagagtatgttgactggtgtaaatatt 25108752  T
Q  350 cctgcttcctggttgtcagaggctgctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaa 449  Q
    |  | ||| |||||||||||||| ||||||||| ||| |||||| ||||| |||||||||||||| ||||||| |||||||||  |||| |||||| | |    
T  25108753 ctgggttcttggttgtcagaggccgctatgatgttgaattgtcgaagaggcaccattccttttgtttatttggggctgcctatatgaggggattctggga 25108852  T
Q  450 aaatctctttttggaaacctg 470  Q
    || | ||||||||||||||||    
T  25108853 aactttctttttggaaacctg 25108873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 25108467 - 25108509
Alignment:
Q  43 gagtttcctttagagcggggtcttcgtcagggtgaccccttgt 85  Q
    ||||| |||||| || |||||||||||||||||||||||||||    
T  25108467 gagttccctttacagtggggtcttcgtcagggtgaccccttgt 25108509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 42451393 - 42451441
Alignment:
Q  32 gtccgacggatgagtttcctttagagcggggtcttcgtcagggtgaccc 80  Q
    |||||||||| ||||||||| | |||||||| ||||||||||| |||||    
T  42451393 gtccgacggaagagtttcctatggagcggggccttcgtcagggggaccc 42451441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 231 - 467
Target Start/End: Complemental strand, 32304365 - 32304129
Alignment:
Q  231 tcattggtgagaagagctagttgaacgttcgtacaatgaggtcggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattat 330  Q
    |||| ||||||||||||||||| || |||||||| ||||| ||||||||| | ||||||| |||| | || ||||||| | ||||||| |||||||  ||    
T  32304365 tcataggtgagaagagctagttaaatgttcgtactatgagatcggtgttgttgttatttgaggagttgtcaggtctcaaagtgaatttccacaaaagcat 32304266  T
Q  331 gctgattggtgcaaacatccctgcttcctggttgtcagaggctgctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcct 430  Q
    | ||| |||||  || || || |  || ||||| |||||||  |||| | |||||| |||||| |||||| ||||||||||||| ||||| | |||||||    
T  32304265 gttgactggtgttaatattcccgtctcttggttatcagaggtggctaagttgatgaattgtcgaagaggtgccattccttttgtctatttagggctgcct 32304166  T
Q  431 atcggaggtgattctagaaaaatctctttttggaaac 467  Q
    || |||||||||||||||||| | |||||||||||||    
T  32304165 ataggaggtgattctagaaaactttctttttggaaac 32304129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 250 - 470
Target Start/End: Original strand, 40903142 - 40903362
Alignment:
Q  250 gttgaacgttcgtacaatgaggtcggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctgattggtgcaaacatc 349  Q
    |||||| || |||||||||||||  ||| |||||||||||| ||||||||| ||||||| | | ||||| ||||| | |||| ||| ||||| ||| ||     
T  40903142 gttgaatgtgcgtacaatgaggtatgtgctgcttttatttgaggagctttcaggtctcaaagttaatttccacaagagtatgttgactggtgtaaatatt 40903241  T
Q  350 cctgcttcctggttgtcagaggctgctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaa 449  Q
    |||  ||| |||||||| ||||| ||| || |||||| |||||| || |||| |||||||||||| ||||||| | ||||||| ||||| |||||| | |    
T  40903242 cctatttcgtggttgtctgaggcggctttgttgatgaattgtcggaggggtatcattccttttgtttatttggggttgcctattggaggggattctcgga 40903341  T
Q  450 aaatctctttttggaaacctg 470  Q
    || | ||||||||||||||||    
T  40903342 aactttctttttggaaacctg 40903362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 40902928 - 40902977
Alignment:
Q  36 gacggatgagtttcctttagagcggggtcttcgtcagggtgaccccttgt 85  Q
    |||||||||||||||| ||||  |||| |||||||| |||||||||||||    
T  40902928 gacggatgagtttcctctagaaaggggccttcgtcaaggtgaccccttgt 40902977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 40370155 - 40370107
Alignment:
Q  32 gtccgacggatgagtttcctttagagcggggtcttcgtcagggtgaccc 80  Q
    |||||||| | ||||||||| | |||||||||||||||||||| |||||    
T  40370155 gtccgacgaaagagtttcctatggagcggggtcttcgtcagggggaccc 40370107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 19250386 - 19250333
Alignment:
Q  32 gtccgacggatgagtttcctttagagcggggtcttcgtcagggtgaccccttgt 85  Q
    ||||||| |||||||||||| ||||| ||||||||||||| |||||||| ||||    
T  19250386 gtccgactgatgagtttcctatagagaggggtcttcgtcaaggtgaccctttgt 19250333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 485
Target Start/End: Complemental strand, 21606604 - 21606520
Alignment:
Q  401 accattccttttgtatatttggagctgcctatcggaggtgattctagaaaaatctctttttggaaacctgatgtccatctcattg 485  Q
    |||||||||||||| ||| |||  || ||||| || ||||||||||| ||  | |||||||||||||||| |||| ||| |||||    
T  21606604 accattccttttgtctatctgggactccctattggtggtgattctaggaagttttctttttggaaacctgttgtcgatcacattg 21606520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 13062559 - 13062607
Alignment:
Q  32 gtccgacggatgagtttcctttagagcggggtcttcgtcagggtgaccc 80  Q
    |||| ||||| ||||||||| | ||||||||||||||||| ||||||||    
T  13062559 gtccaacggaggagtttcctattgagcggggtcttcgtcaaggtgaccc 13062607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University