View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_30 (Length: 211)
Name: NF8381_low_30
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 43619560 - 43619389
Alignment:
| Q |
1 |
tcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcctacaagaaggcaaaaacaaagaaaacacaatc |
100 |
Q |
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| T |
43619560 |
tcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcctacaagaaggcaaaaacaaagaaaacacaatc |
43619461 |
T |
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| Q |
101 |
accttgagctcaagtaacatgtgatgtgctatgtatctcgacacttcaaattattaatagtgtcgatgtgtt |
172 |
Q |
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| T |
43619460 |
accttgagctcaagtaacatgtgatgtgctatgtatctcgacacttcaaattattaatagtgtcgatgtgtt |
43619389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 43626873 - 43626809
Alignment:
| Q |
5 |
tgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
69 |
Q |
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| T |
43626873 |
tgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggatcccagcct |
43626809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 32407681 - 32407745
Alignment:
| Q |
5 |
tgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
69 |
Q |
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| T |
32407681 |
tgcagctcctgcagttgcaccaaatccaggtactacattgagcactccatctggaattccagcct |
32407745 |
T |
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