View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_4 (Length: 489)
Name: NF8381_low_4
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 190 - 422
Target Start/End: Complemental strand, 6246470 - 6246239
Alignment:
| Q |
190 |
acaaagaccaacctaaattatggaagcagataatagagatatacctacagaatgttttgaaaattcttctt---ttgacaggctaaatcttaccgaacat |
286 |
Q |
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| T |
6246470 |
acaaagaccaacctaaattatggaagcagataatagagagatacctacagaatgttttgaaaattcttcttcttttgacaggctaaatcttaccgaacat |
6246371 |
T |
|
| Q |
287 |
tggaatctaccaactgcttaaacaaagaaacaaacaaaaaaggaaaggtaactgactaagtgtgtgtgcgcacgtgacaagcagtaattaaattaggaaa |
386 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6246370 |
tggaatctaccaactgcttaaacaaagaaacaaa----aaaggaaaggtaactgactaagtgtgtgtgcgcacgtgacaagcagtaattaaattaggaaa |
6246275 |
T |
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| Q |
387 |
cccaaattccacgaatctaataaccctaaccataca |
422 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6246274 |
cccaaattccacgaatctaataaccctaaccataca |
6246239 |
T |
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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 19080216 - 19080162
Alignment:
| Q |
127 |
aattaaaatgccacatgtgtagtggtaccaaagggtgtacaaaacaaatgtgtct |
181 |
Q |
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| T |
19080216 |
aattaaaatgccacatgtgtagtggtaccaaagggtgtacaaaacaagtgtgtct |
19080162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 10228617 - 10228563
Alignment:
| Q |
127 |
aattaaaatgccacatgtgtagtggtaccaaagggtgtacaaaacaaatgtgtct |
181 |
Q |
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| T |
10228617 |
aattaaaatgccacatgtgtagtggtatcaaagggtgtacaaaacaagtgtgtct |
10228563 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 23607116 - 23607062
Alignment:
| Q |
127 |
aattaaaatgccacatgtgtagtggtaccaaagggtgtacaaaacaaatgtgtct |
181 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |
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| T |
23607116 |
aattaaaatgccacatatgtagtggtacaaaagggtgtacaaaacaagtgtgtct |
23607062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 12767659 - 12767713
Alignment:
| Q |
127 |
aattaaaatgccacatgtgtagtggtaccaaagggtgtacaaaacaaatgtgtct |
181 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
12767659 |
aattaaaatggcacatgtgtagtggtatcaaagggtgtacaaaacaagtgtgtct |
12767713 |
T |
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