View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8381_low_7 (Length: 438)
Name: NF8381_low_7
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8381_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 42798359 - 42798777
Alignment:
| Q |
1 |
ttagcagacatgatagaatcacatattaatattggaacatgttactactttgtcaacattgtagttaatgtagttataagttcatttagacctttctttt |
100 |
Q |
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| T |
42798359 |
ttagcagacatgatagaatcacatattaatattggaagatgttactactttgtcaacattgtagttaatgtagttataagttcatttagacctttctttt |
42798458 |
T |
|
| Q |
101 |
ccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcttgatccatgacaggcagggaagtgtagagcaagagggttc |
200 |
Q |
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| T |
42798459 |
ccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcaagatccatgacaggcagggaagtgtagagcaagagggttc |
42798558 |
T |
|
| Q |
201 |
agacgtatatatggagctaatagactttgaatgtaatccagttgtgatggctaactttgggataatcacagtaactggatctgttgcttttcaaaatgtt |
300 |
Q |
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| T |
42798559 |
agacgtatatatggagctaatagactttgaatgtaatccagttgcgatggctaactttgggataatcacagtaactggatctgttgcttttcaaaatgtt |
42798658 |
T |
|
| Q |
301 |
taacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttgcaaagagtacaggttttaaagcagtggagttatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798659 |
taacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttgcaaagagtacaggttttaaagcagtggagttatgt |
42798758 |
T |
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| Q |
401 |
gtggattgtgagagagact |
419 |
Q |
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| T |
42798759 |
gtggattgtgagagagact |
42798777 |
T |
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