View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8381_low_9 (Length: 388)

Name: NF8381_low_9
Description: NF8381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8381_low_9
NF8381_low_9
[»] chr7 (10 HSPs)
chr7 (93-367)||(44962165-44962440)
chr7 (151-241)||(44963104-44963194)
chr7 (155-245)||(20046693-20046785)
chr7 (155-245)||(28124784-28124876)
chr7 (155-245)||(28126611-28126703)
chr7 (155-245)||(4895527-4895619)
chr7 (298-367)||(28125737-28125806)
chr7 (17-61)||(44962100-44962144)
chr7 (153-187)||(36989612-36989646)
chr7 (209-245)||(37405646-37405682)
[»] chr1 (14 HSPs)
chr1 (244-367)||(17450152-17450275)
chr1 (155-245)||(48940621-48940711)
chr1 (152-241)||(17449253-17449342)
chr1 (155-245)||(16808775-16808867)
chr1 (209-245)||(9310411-9310447)
chr1 (209-245)||(3282800-3282836)
chr1 (209-245)||(3284501-3284537)
chr1 (209-245)||(9312028-9312064)
chr1 (209-245)||(37664751-37664787)
chr1 (209-245)||(37674473-37674509)
chr1 (209-245)||(37702185-37702221)
chr1 (155-192)||(51020572-51020609)
chr1 (209-245)||(902076-902112)
chr1 (209-245)||(5924970-5925006)
[»] chr8 (9 HSPs)
chr8 (153-241)||(31032199-31032287)
chr8 (155-245)||(30224175-30224265)
chr8 (153-241)||(3375623-3375711)
chr8 (155-245)||(5567371-5567461)
chr8 (167-245)||(6428699-6428775)
chr8 (189-245)||(3379310-3379366)
chr8 (155-200)||(5567682-5567727)
chr8 (209-245)||(14935576-14935612)
chr8 (155-187)||(25248957-25248989)
[»] chr4 (15 HSPs)
chr4 (155-245)||(7040306-7040396)
chr4 (155-245)||(23564871-23564961)
chr4 (155-245)||(52518702-52518794)
chr4 (155-245)||(52520544-52520636)
chr4 (166-245)||(18656064-18656143)
chr4 (155-245)||(3274636-3274726)
chr4 (287-367)||(52519588-52519668)
chr4 (155-242)||(23566548-23566626)
chr4 (209-245)||(23985773-23985809)
chr4 (209-245)||(52545297-52545333)
chr4 (209-245)||(18320077-18320113)
chr4 (209-245)||(18395830-18395866)
chr4 (209-245)||(18398570-18398606)
chr4 (329-357)||(23565709-23565737)
chr4 (209-245)||(24807423-24807459)
[»] chr6 (14 HSPs)
chr6 (152-241)||(15149245-15149334)
chr6 (155-245)||(19645496-19645586)
chr6 (161-245)||(5378681-5378767)
chr6 (155-245)||(5376820-5376912)
chr6 (287-367)||(5377706-5377786)
chr6 (155-223)||(9414964-9415032)
chr6 (155-200)||(9415052-9415097)
chr6 (179-245)||(1088849-1088915)
chr6 (209-245)||(15866579-15866615)
chr6 (209-245)||(15868391-15868427)
chr6 (209-245)||(32079909-32079945)
chr6 (209-245)||(33866098-33866134)
chr6 (209-245)||(33869245-33869281)
chr6 (155-193)||(30376227-30376265)
[»] chr2 (6 HSPs)
chr2 (155-245)||(29758065-29758155)
chr2 (153-221)||(8759203-8759271)
chr2 (298-359)||(31154866-31154927)
chr2 (164-227)||(20516164-20516227)
chr2 (325-359)||(41603178-41603212)
chr2 (160-196)||(31155727-31155763)
[»] chr3 (4 HSPs)
chr3 (153-241)||(1139956-1140044)
chr3 (155-245)||(17402979-17403071)
chr3 (155-245)||(6789565-6789655)
chr3 (323-360)||(6790471-6790508)
[»] scaffold0006 (1 HSPs)
scaffold0006 (209-245)||(39144-39180)
[»] chr5 (1 HSPs)
chr5 (209-245)||(39787255-39787291)
[»] scaffold0251 (1 HSPs)
scaffold0251 (209-245)||(6225-6261)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 93 - 367
Target Start/End: Original strand, 44962165 - 44962440
Alignment:
Q  93 cttataatttaaatactttaccattcacgtttt-tgtatatctaagtcatgttatacctgctattaagatagttggaagttatgtggagttagttaaggt 191  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  44962165 cttataatttaaatactttaccatttacgttttttgtatatctaagtcatgttatacctgctattaacatagttggaagttatgtgaagttagttaaggt 44962264  T
Q  192 agttagacttaagtgagtaatcaactatagttagttgataagtaaactagagttttgtattcgatcccggcggaatgannnnnnnaattctgttgtgtgt 291  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||       ||||| |||||||||    
T  44962265 agttagacttgagtgagtaatcaactatagttagttgataagtaaactagggttttgtattcaatcccggcggaatgatttctttaattccgttgtgtgt 44962364  T
Q  292 tgtcgtcaaagttcttcgccacacacgttcacgtttatggtggataccttgggatcgagggaggcatatatggatt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44962365 tgtcgtcaaagttcttcgccacacacgttcacgtttatggtggataccttgggatcgagggaggcatatatggatt 44962440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 44963104 - 44963194
Alignment:
Q  151 gctattaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  44963104 gctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactag 44963194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 20046785 - 20046693
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  20046785 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 20046693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 28124876 - 28124784
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  28124876 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 28124784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 28126703 - 28126611
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  28126703 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 28126611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 4895527 - 4895619
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||||||||| |||||||||||||||||||| |  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  4895527 ttaaaatagttggaagttatgtgtagttagttaaggtagttagattagagtaattgtaatcaactatagttagttgataagtaaactagagtt 4895619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 28125806 - 28125737
Alignment:
Q  298 caaagttcttcgccacacacgttcacgtttatggtggataccttgggatcgagggaggcatatatggatt 367  Q
    |||||| ||||  |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  28125806 caaagtacttcttcacacatgttcgcgtttatggtggataccttgggatcgagggaggcatatacggatt 28125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 44962100 - 44962144
Alignment:
Q  17 tgtgattccctctagcatagtttttgcttgtgtttaaacattatg 61  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  44962100 tgtgattccctctagcatagtttttgcttgagtttaaacattatg 44962144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 36989646 - 36989612
Alignment:
Q  153 tattaagatagttggaagttatgtggagttagtta 187  Q
    |||||||||||||||||||||||| ||||||||||    
T  36989646 tattaagatagttggaagttatgtagagttagtta 36989612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 37405682 - 37405646
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||||||||||||||||  ||||||||||||    
T  37405682 taatcaactatagttagttgatagataaactagagtt 37405646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 244 - 367
Target Start/End: Original strand, 17450152 - 17450275
Alignment:
Q  244 ttttgtattcgatcccggcggaatgannnnnnnaattctgttgtgtgttgtcgtcaaagttcttcgccacacacgttcacgtttatggtggataccttgg 343  Q
    ||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17450152 ttttgtattcgatcccggcggaatgatttctttaattccgttgtgtgttgtcgtcaaagttcttcaccacacacgttcacgtttatggtggataccttgg 17450251  T
Q  344 gatcgagggaggcatatatggatt 367  Q
    ||||||||||||||||||||||||    
T  17450252 gatcgagggaggcatatatggatt 17450275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 48940621 - 48940711
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  48940621 ttaaaatagttggaagttatgtggagttagttaaggtagttagacaagagttagtaatcaactatagttagttgataagtaaactagagtt 48940711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 17449253 - 17449342
Alignment:
Q  152 ctattaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactag 241  Q
    |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||    
T  17449253 ctattatgatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaactatagttagttgataagtaaactag 17449342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 16808867 - 16808775
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  16808867 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 16808775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 9310411 - 9310447
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  9310411 taatcaactatagttagttgataagtaaactagagtt 9310447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 3282800 - 3282836
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3282800 taatcaactatagttagttgataggtaaactagagtt 3282836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 3284501 - 3284537
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3284501 taatcaactatagttagttgataggtaaactagagtt 3284537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 9312028 - 9312064
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9312028 taatcaactatagttagttgataggtaaactagagtt 9312064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 37664787 - 37664751
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37664787 taatcaactatagttagttgataggtaaactagagtt 37664751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 37674509 - 37674473
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37674509 taatcaactatagttagttgataggtaaactagagtt 37674473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 37702185 - 37702221
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37702185 taatcaactatagttagttgataggtaaactagagtt 37702221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 51020572 - 51020609
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggta 192  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  51020572 ttaaaatagttggaagttatgtggagttggttaaggta 51020609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 902076 - 902112
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||| |||||||||||||||| |||||||||||||    
T  902076 taatcatctatagttagttgataggtaaactagagtt 902112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 5925006 - 5924970
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  5925006 taatcaactatagttagttgataggtaaattagagtt 5924970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 31032287 - 31032199
Alignment:
Q  153 tattaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  31032287 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactag 31032199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 30224175 - 30224265
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  30224175 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagtt 30224265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 3375711 - 3375623
Alignment:
Q  153 tattaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactag 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  3375711 tattaagatagttggaagttatgtggagttagttaaggtagttagacttctgttagtaatcaactatagttagttgataagtaaactag 3375623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 5567371 - 5567461
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||| ||||||||||||| |||||||||| |||||||||||  ||| |||||||||||||||||||||||||  ||||||||||||    
T  5567371 ttaaaatagctggaagttatgtgaagttagttaaagtagttagactagagttagtaatcaactatagttagttgatagctaaactagagtt 5567461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 6428699 - 6428775
Alignment:
Q  167 gaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||||||||||||||  ||||||||||   ||| |||||||||||||| ||||||||||||||||||||||||    
T  6428699 gaagttatgtggagttagtta--gtagttagacaagagttagtaatcaactataattagttgataagtaaactagagtt 6428775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 3379366 - 3379310
Alignment:
Q  189 ggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||  ||| |||||||||||||||||||||||||  ||||||||||||    
T  3379366 ggtagttagactagagttagtaatcaactatagttagttgatagttaaactagagtt 3379310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 5567727 - 5567682
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagact 200  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||    
T  5567727 ttaaaatagctggaagttatgtgaagttagttaaggtagttagact 5567682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 14935576 - 14935612
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14935576 taatcaactatagttagttgataggtaaactagagtt 14935612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 25248957 - 25248989
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagtta 187  Q
    |||||||||||||||||||||||||||||||||    
T  25248957 ttaagatagttggaagttatgtggagttagtta 25248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 7040306 - 7040396
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  7040306 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagtt 7040396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 23564961 - 23564871
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  23564961 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagtt 23564871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 52518702 - 52518794
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  52518702 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 52518794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 52520544 - 52520636
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  52520544 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 52520636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 18656064 - 18656143
Alignment:
Q  166 ggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||||||  ||||||||||||    
T  18656064 ggaagttatgtgaagttagttaaggtagttagactagagttagtaatcaactatagttagttgatagctaaactagagtt 18656143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 3274726 - 3274636
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| ||||||||||||||| || |||||||||||||||| | |||  ||| |||||||||||||| |||||||||| |||||| ||||||    
T  3274726 ttaaaatagttggaagttatatgaagttagttaaggtagtaaaactatagttagtaatcaactataattagttgataggtaaacaagagtt 3274636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 367
Target Start/End: Original strand, 52519588 - 52519668
Alignment:
Q  287 tgtgttgtcgtcaaagttcttcgccacacacgttcacgtttatggtggataccttgggatcgagggaggcatatatggatt 367  Q
    ||||||||  ||||||| ||||  |||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  52519588 tgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggataccttggaatcgagggaggcatatacggatt 52519668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 23566626 - 23566548
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactaga 242  Q
    |||||||||||| ||||||||||||||||         ||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  23566626 ttaagatagttgaaagttatgtggagtta---------gttagactagagttagtaatcaactatagttagttgataagtaaactaga 23566548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 23985773 - 23985809
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  23985773 taatcaactatagttagttgataggtaaactagagtt 23985809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 52545333 - 52545297
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  52545333 taatcaactatagttagttgataggtaaactagagtt 52545297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 18320077 - 18320113
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||||||||| |||||| |||||||||||||    
T  18320077 taatcaactatagttaattgataggtaaactagagtt 18320113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 18395866 - 18395830
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  18395866 taatcaactatagttagttgataggtaaactatagtt 18395830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 18398606 - 18398570
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||||||||| |||||| |||||||||||||    
T  18398606 taatcaactatagttaattgataggtaaactagagtt 18398570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 357
Target Start/End: Complemental strand, 23565737 - 23565709
Alignment:
Q  329 tggtggataccttgggatcgagggaggca 357  Q
    |||||||||||||||||||||||||||||    
T  23565737 tggtggataccttgggatcgagggaggca 23565709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 24807423 - 24807459
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  24807423 taatcaactatagttagttgataggtaaattagagtt 24807459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 15149334 - 15149245
Alignment:
Q  152 ctattaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactag 241  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15149334 ctattaagatagttggaagttatgcggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactag 15149245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 19645586 - 19645496
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||||||| ||||    
T  19645586 ttaagatagttagaagatatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactaaagtt 19645496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 5378681 - 5378767
Alignment:
Q  161 tagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  5378681 tagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 5378767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 5376820 - 5376912
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  5376820 ttaaaatagttggaagttatatgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 5376912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 367
Target Start/End: Original strand, 5377706 - 5377786
Alignment:
Q  287 tgtgttgtcgtcaaagttcttcgccacacacgttcacgtttatggtggataccttgggatcgagggaggcatatatggatt 367  Q
    ||||||||  ||||||| ||||  |||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  5377706 tgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggataccttggtatcgagggaggcatatacggatt 5377786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 9414964 - 9415032
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagtt 223  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||  ||| ||| |||||||||||||    
T  9414964 ttaaaatagttggaagttatgcggagttagttaaggtagttagactagagttagtgatcaactatagtt 9415032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 9415052 - 9415097
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagact 200  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||    
T  9415052 ttaaaatagttggaagttatgtggagttagttaaggaagttagact 9415097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 1088915 - 1088849
Alignment:
Q  179 agttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||| ||||||| | |  ||| ||| ||||||||||||||||||||||||||| |||||||    
T  1088915 agttagttaaagtagttaaattagagttagtgatcaactatagttagttgataagtaaattagagtt 1088849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 15866579 - 15866615
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15866579 taatcaactatagttagttgataggtaaactagagtt 15866615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 15868391 - 15868427
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15868391 taatcaactatagttagttgataggtaaactagagtt 15868427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 32079909 - 32079945
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32079909 taatcaactatagttagttgataggtaaactagagtt 32079945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 33866098 - 33866134
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  33866098 taatcaactatagttagttgataggtaaactagagtt 33866134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 33869245 - 33869281
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  33869245 taatcaactatagttagttgataggtaaactagagtt 33869281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 30376227 - 30376265
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtag 193  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  30376227 ttaaaatagttggaagttatgtggagttagttaacgtag 30376265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 29758065 - 29758155
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||||    
T  29758065 ttaagatagttggaagttatgtggagttagttaaggtagttagactagacttagtaatcaactatagttagttgataagtaaactagagtt 29758155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 8759271 - 8759203
Alignment:
Q  153 tattaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  8759271 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatag 8759203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 31154927 - 31154866
Alignment:
Q  298 caaagttcttcgccacacacgttcacgtttatggtggataccttgggatcgagggaggcata 359  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31154927 caaagttcttcgtcacacatgttcacgtttgtggtggataccttgggatcgagggaggcata 31154866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 20516227 - 20516164
Alignment:
Q  164 ttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagtt 227  Q
    |||||||||||||| |||||||||||||| ||| |||  ||| |||||| ||||||||||||||    
T  20516227 ttggaagttatgtgcagttagttaaggtaattaaactggagttagtaattaactatagttagtt 20516164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 359
Target Start/End: Original strand, 41603178 - 41603212
Alignment:
Q  325 tttatggtggataccttgggatcgagggaggcata 359  Q
    |||||||||||||||||||||||||||||||||||    
T  41603178 tttatggtggataccttgggatcgagggaggcata 41603212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 31155763 - 31155727
Alignment:
Q  160 atagttggaagttatgtggagttagttaaggtagtta 196  Q
    |||||||||||||||| ||||||||||||||||||||    
T  31155763 atagttggaagttatgcggagttagttaaggtagtta 31155727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 1139956 - 1140044
Alignment:
Q  153 tattaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactag 241  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||    
T  1139956 tattaagatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaactatagttagttgataagtaaactag 1140044  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 17403071 - 17402979
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtga--gtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||||||||||||    
T  17403071 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagtt 17402979  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 6789565 - 6789655
Alignment:
Q  155 ttaagatagttggaagttatgtggagttagttaaggtagttagacttaagtgagtaatcaactatagttagttgataagtaaactagagtt 245  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||||  |||  |||||||  |||||||||| ||||||| ||||||||||    
T  6789565 ttaaaatagttggaagtaatgtgtagttagttaaggtagttagactagagttggtaatcatgtatagttagtggataagtgaactagagtt 6789655  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 6790471 - 6790508
Alignment:
Q  323 cgtttatggtggataccttgggatcgagggaggcatat 360  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  6790471 cgtttgtggtggataccttgggatcgagggaggcatat 6790508  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 39144 - 39180
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  39144 taatcaactatagttagttgataagtaaactagagtt 39180  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 39787291 - 39787255
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39787291 taatcaactatagttagttgataggtaaactagagtt 39787255  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 6225 - 6261
Alignment:
Q  209 taatcaactatagttagttgataagtaaactagagtt 245  Q
    |||||||||||||||| |||||| |||||||||||||    
T  6225 taatcaactatagttaattgataggtaaactagagtt 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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