View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8382_high_11 (Length: 366)

Name: NF8382_high_11
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8382_high_11
NF8382_high_11
[»] chr6 (3 HSPs)
chr6 (205-314)||(21258608-21258717)
chr6 (31-205)||(7599250-7599425)
chr6 (314-351)||(21260129-21260166)
[»] chr4 (1 HSPs)
chr4 (31-204)||(28463097-28463271)
[»] chr2 (1 HSPs)
chr2 (31-204)||(45401340-45401514)
[»] chr5 (2 HSPs)
chr5 (92-204)||(3533764-3533876)
chr5 (136-205)||(19610521-19610590)
[»] scaffold0014 (1 HSPs)
scaffold0014 (97-204)||(89805-89913)
[»] chr7 (1 HSPs)
chr7 (138-202)||(17712889-17712953)
[»] chr3 (1 HSPs)
chr3 (31-64)||(23361094-23361127)
[»] scaffold0002 (1 HSPs)
scaffold0002 (159-195)||(446839-446875)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 21258608 - 21258717
Alignment:
Q  205 taattttatgtctttttctttatgaccacacaatttgtatattatagcattctttagaactttgaacttgatgctcagaattggtatatgataatcttta 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21258608 taattttatgtctttttctttatgaccacacaatttgtatattatagcattctttagaactttgaacttgatgctcagaattggtatatgataatcttta 21258707  T
Q  305 gaactatgtt 314  Q
    ||| ||||||    
T  21258708 gaattatgtt 21258717  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 7599425 - 7599250
Alignment:
Q  31 ttgagttatcactgaagtgttgataacatttaccnnnnnnnatttgttcnnnnnnnn-tatggagtaacattttattttatgggtgctcttaaaactgnn 129  Q
    |||||||||||||||||||||| |||||||||||       ||||||||         ||| |||||||||||||||| |||||||||||||||||||      
T  7599425 ttgagttatcactgaagtgttggtaacatttacctttttttatttgttcaaaaagaaatatagagtaacattttatttgatgggtgctcttaaaactgaa 7599326  T
Q  130 nnnnnnttatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtagtgt 205  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7599325 aataaattatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtagtgt 7599250  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 21260129 - 21260166
Alignment:
Q  314 taatgcataaaatacttttaatgtgttttcttaatttt 351  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21260129 taatgcataaaatacttttaatgtgttttcttaatttt 21260166  T

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Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 28463097 - 28463271
Alignment:
Q  31 ttgagttatcactgaagtgttgataacatttaccnnnnnnnatttgttcnnnnnnnn-tatggagtaacattttattttatgggtgctcttaaaactgnn 129  Q
    |||||||||||||||||||||| |||||||||||       ||||||||         ||| |||||||||||||||| |||||||||||||||||||      
T  28463097 ttgagttatcactgaagtgttggtaacatttacctttttttatttgttcaaaaagaaatatagagtaacattttatttgatgggtgctcttaaaactgaa 28463196  T
Q  130 nnnnnnttatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtagtg 204  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28463197 aataaattatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtagtg 28463271  T

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Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 45401514 - 45401340
Alignment:
Q  31 ttgagttatcactgaagtgttgataacatttaccnnnnnnnatttgttcnnnnnnnn-tatggagtaacattttattttatgggtgctcttaaaactgnn 129  Q
    |||||||||||||||||||||| |||||||||||       ||||||||         ||| ||||||||||||||||||||||||||||||||||||      
T  45401514 ttgagttatcactgaagtgttggtaacatttaccttgttttatttgttcaaaaagaaatatagagtaacattttattttatgggtgctcttaaaactgaa 45401415  T
Q  130 nnnnnnttatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtagtg 204  Q
          ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45401414 aataaattatgtgtgtaacacttttttaaaattgtcaccccaaaaatgttgcaaaatgtcatatgtgcagtagtg 45401340  T

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Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 3533876 - 3533764
Alignment:
Q  92 gagtaacattttattttatgggtgctcttaaaactgnnnnnnnnttatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcat 191  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  3533876 gagtaacattttattttatgggtgctcttaaaactgaaaataaattatgtgtgtaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatttcat 3533777  T
Q  192 atgtgcagtagtg 204  Q
    |||||||||||||    
T  3533776 atgtgcagtagtg 3533764  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 19610590 - 19610521
Alignment:
Q  136 ttatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtagtgt 205  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  19610590 ttatgtgtgtaacacttttttaaaattatcaccgcaaaaatgttgcaaaatgtcatatgtgcagtagtgt 19610521  T

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Target: scaffold0014 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 89913 - 89805
Alignment:
Q  97 acattttattttatgggtgctcttaaaa-ctgnnnnnnnnttatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgt 195  Q
    |||||||||||||||||||||||||||| |||        |||| |||||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  89913 acattttattttatgggtgctcttaaaaactgaaaataaattatttgtgtaacacttttttaaaattttcaccgtaaaaatgttacaaaatgtcatatgt 89814  T
Q  196 gcagtagtg 204  Q
    ||| |||||    
T  89813 gcaatagtg 89805  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 17712889 - 17712953
Alignment:
Q  138 atgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtag 202  Q
    ||||||||||||||||| |  ||||||||||| ||||||||| ||||||||||| ||||||||||    
T  17712889 atgtgtgtaacacttttgttcaattgtcaccaaaaaaatgttacaaaatgtcatgtgtgcagtag 17712953  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 23361127 - 23361094
Alignment:
Q  31 ttgagttatcactgaagtgttgataacatttacc 64  Q
    |||||||||||||||||||||| |||||||||||    
T  23361127 ttgagttatcactgaagtgttggtaacatttacc 23361094  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 446839 - 446875
Alignment:
Q  159 aattgtcaccacaaaaatgttgcaaaatgtcatatgt 195  Q
    |||||| |||| |||||||||||||||||||||||||    
T  446839 aattgttaccagaaaaatgttgcaaaatgtcatatgt 446875  T

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