View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_high_13 (Length: 338)
Name: NF8382_high_13
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 26609109 - 26609359
Alignment:
| Q |
10 |
atgagatgaaaatggaacatattatactttgatgtttaaatctctcatcgtaattagtcacatctctttaatagtgtcaatgaccaattttatgacattc |
109 |
Q |
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| T |
26609109 |
atgagatgaaaatggaacatattatactttgatgtttaaatctatcatcgtaattagtcacatctctttaatagtgtcaatga------------cattc |
26609196 |
T |
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| Q |
110 |
acttgtttggcctttttgacctgtgcagaataatgttctttgttttttgacagaagaaaaggttaatgtaatttttaacaacttaaatttcagtttatca |
209 |
Q |
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| T |
26609197 |
acttgtttggcctttttgacctgtgcagaataatgttctttgttttttgacagaagaaaaagttaatgtaatttttaacaacttaaatttcagtttatca |
26609296 |
T |
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| Q |
210 |
tttttgtatagaatattgtaaaagtttgctcttggtgttcaacaaaactaggttactatggta |
272 |
Q |
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| T |
26609297 |
tttttgtatagaatattgtaaaagtttgctcttggtgttcaacaaaactaggttactgtggta |
26609359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 322
Target Start/End: Original strand, 26609378 - 26609409
Alignment:
| Q |
291 |
aaataacaagtcctgcattgatgagtagtttt |
322 |
Q |
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| T |
26609378 |
aaataacaagtcctgcattgatgagtagtttt |
26609409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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