View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8382_high_14 (Length: 327)
Name: NF8382_high_14
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 148 - 312
Target Start/End: Complemental strand, 29298599 - 29298435
Alignment:
| Q |
148 |
acctaagcatatgcaaactgataacttttatgaatacattgtataaaatatttatcatggatatattgaatgaatacaagagtaagaatagtaatttaga |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29298599 |
acctaagcatatgcaaactgataacttttatgaatacattgtataaaatatttatcatggatatattgaatgaatacaagagtaagaatagtaatttaga |
29298500 |
T |
|
| Q |
248 |
cttctattttctgttccttttattactttatcaatatgacttctgcaactgttgatctgcaatgt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29298499 |
cttctattttctgttccttttattactttatcaatatgacttctgcaactgttgatctgcaatgt |
29298435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 29298778 - 29298636
Alignment:
| Q |
9 |
tattattctttcatgatcccaaagcaggactggaatatataggaccaggacattggttccataagttccttttatgctcgattttagtctacaattagat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29298778 |
tattattctttcatgatcccaaagcaggacaggaatatataggaccaggacattggttccataagttccttttatgctcgattttagtctacaattagat |
29298679 |
T |
|
| Q |
109 |
taatttctaannnnnnncaagcacctacagtgtaattacacct |
151 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29298678 |
taatttctaatttttttcaagcacctacagtgtaattacacct |
29298636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University