View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8382_high_20 (Length: 241)
Name: NF8382_high_20
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32248602 - 32248375
Alignment:
| Q |
1 |
aagaaagagaacgagacccaagacaccatggacatagtcaaaatggtttggaagaaactatctgcagtttaaggattgtggagaacatcgctcgccctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248602 |
aagaaagagaacgagacccaagacacagcggacatagtcaaaatggtttggaagaaactatctgcagtttaaggattgtggagaacatcgctcgccctgc |
32248503 |
T |
|
| Q |
101 |
acgtgcagatctctacaacccacgtgcaggtcgcatcagcgatgctaacagtttaaccctcccaatccttcgcaatttacgcctcagtgctgaatatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248502 |
acgtgcagatctctacaacccacgtgcaggtcgcatcagcgatgctaacagtttaaccctcccaatccttcgcaatttacgcctcagtgctgaatatgtt |
32248403 |
T |
|
| Q |
201 |
ctcctctacagggtatgatagtactact |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32248402 |
ctcctctacagggtatgatagtactact |
32248375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 32253305 - 32253130
Alignment:
| Q |
42 |
aatggtttggaagaaactatctgcagtttaaggattgtggagaacatcgctcgccctgcacgtgcagatctctacaacccacgtgcaggtcgcatcagcg |
141 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32253305 |
aatggtttggaagaaactatctgcagtgcaagacttgtggagaacatcgctcgccctgcacatgcagatctctacaacccacgtgcaggtcgcatcagtg |
32253206 |
T |
|
| Q |
142 |
atgctaacagtttaaccctcccaatccttcgcaatttacgcctcagtgctgaatatgttctcctctacagggtatg |
217 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32253205 |
atgttaacagtttaaccctcccaatcctccgcaatttacgcctcagtgccgaatatgttctcctctacagggtatg |
32253130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 32242733 - 32242558
Alignment:
| Q |
42 |
aatggtttggaagaaactatctgcagtttaaggattgtggagaacatcgctcgccctgcacgtgcagatctctacaacccacgtgcaggtcgcatcagcg |
141 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32242733 |
aatggtttggaagaaactatctgcagtgcaagacttgtggagaacatcgctcgccctgcacatgcagatctctacaacccacgtgcaggtcgcatcagtg |
32242634 |
T |
|
| Q |
142 |
atgctaacagtttaaccctcccaatccttcgcaatttacgcctcagtgctgaatatgttctcctctacagggtatg |
217 |
Q |
| |
|
||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32242633 |
atgttaacagtttaactctcccaatcctccgcaatttacgcctcagtgctgaatatgttctcctctatagggtatg |
32242558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 30604963 - 30605136
Alignment:
| Q |
42 |
aatggtttggaagaaactatctgcagtttaaggattgtggagaacatcgctcgccctgcacgtgcagatctctacaacccacgtgcaggtcgcatcagcg |
141 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||||| |||| ||||||||||||||| ||||||||||||||||| || || |||||| |
|
|
| T |
30604963 |
aatggtttggaagaaactatctgcagtgcgaagattcgcgagaacatagctcaccctgcacgtgcagacctctacaacccacgtgccggacgaatcagca |
30605062 |
T |
|
| Q |
142 |
atgctaacagtttaaccctcccaatccttcgcaatttacgcctcagtgctgaatatgttctcctctacagggta |
215 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||| || |||| ||||| || |||||||||||||| |
|
|
| T |
30605063 |
ccgtcaacagtttaaccctcccaatcctccgcaatttacgtcttggtgccgaatacgtagtcctctacagggta |
30605136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University