View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_high_23 (Length: 231)
Name: NF8382_high_23
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 50443144 - 50442943
Alignment:
| Q |
14 |
cagagaataaggaaggggtaaaggggttaatagcagtggcaattgacaaagaaaagggaagccaaaatgcactcaaatgggttgttgacaatctcctcac |
113 |
Q |
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| T |
50443144 |
cagagaacaaggaaggggtaaaggggttaatagcagtggcaattgacaaagaaaagggaagccaaaatgcactcaaatgggttgttgacaatctcctcac |
50443045 |
T |
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| Q |
114 |
aagaaatgcaactgtaattctcatccatgtcagggtttcggcaccttctcttccttcatcaccttcttttttcaccataagtaagtaagccttgtacata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50443044 |
aagaaatgcaactgtaattctcatccatgtcagggtttcggcaccttctcttccttcatcaccttcttttttcaccataagtaagtaagccttgtacata |
50442945 |
T |
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| Q |
214 |
tt |
215 |
Q |
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|| |
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| T |
50442944 |
tt |
50442943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 50422785 - 50422671
Alignment:
| Q |
31 |
gtaaaggggttaatagcagtggcaattgacaaagaaaagggaagccaaaatgcactcaaatgggttgttgacaatctcctcacaagaaatgcaactgtaa |
130 |
Q |
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| T |
50422785 |
gtaaatggattagtagcagtggcaatagataatgaaaagggaagccatcgtgctttcaaatgggctattgataatctcctcacaaaaaatgcaactgtaa |
50422686 |
T |
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| Q |
131 |
ttctcatccatgtca |
145 |
Q |
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||||||||||||||| |
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| T |
50422685 |
ttctcatccatgtca |
50422671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 50447752 - 50447626
Alignment:
| Q |
17 |
agaataaggaaggggtaaaggggttaatagcagtggcaattgacaaagaaaagggaagccaaaatgcactcaaatgggttgttgacaatctcctcacaag |
116 |
Q |
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|||| ||||| || ||||| || ||||||||||||||| | |||| ||||||| ||||| |||| ||||||||| | |||| |||||||||||||| |
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| T |
50447752 |
agaagaaggatggtgtaaatggattaatagcagtggcagtaaacaacgaaaaggagagccaccgtgcattcaaatgggctattgataatctcctcacaag |
50447653 |
T |
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| Q |
117 |
aaatgcaactgtaattctcatccatgt |
143 |
Q |
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|||||||| ||| |||||||||||||| |
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| T |
50447652 |
aaatgcaaatgtgattctcatccatgt |
50447626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 1268959 - 1269063
Alignment:
| Q |
46 |
gcagtggcaattgacaaagaaaagggaagccaaaatgcactcaaatgggttgttgacaatctcctcacaagaaatgcaactgtaattctcatccatgtca |
145 |
Q |
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||||||||||| |||| ||| || ||||||||||||||||||||||||| |||||| ||||| ||||| | | ||||| | ||||||||||||||| |
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| T |
1268959 |
gcagtggcaatagacacagataaaggaagccaaaatgcactcaaatgggccgttgaccatctcaccacaaaaggttcaactattgttctcatccatgtca |
1269058 |
T |
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| Q |
146 |
gggtt |
150 |
Q |
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|||| |
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| T |
1269059 |
aggtt |
1269063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 1262645 - 1262728
Alignment:
| Q |
59 |
acaaagaaaagggaagccaaaatgcactcaaatgggttgttgacaatctcctcacaagaaatgcaactgtaattctcatccatgt |
143 |
Q |
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||||| |||||||| ||||||||||| |||||||||||||||| || || || ||||| || |||| || ||||||||||||| |
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| T |
1262645 |
acaaaaaaaaggga-gccaaaatgcagtcaaatgggttgttgaaaagcttctaacaagtggtgaaactatagttctcatccatgt |
1262728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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