View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8382_high_24 (Length: 212)

Name: NF8382_high_24
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8382_high_24
NF8382_high_24
[»] chr5 (1 HSPs)
chr5 (2-188)||(37900879-37901065)
[»] chr8 (2 HSPs)
chr8 (1-31)||(40494623-40494653)
chr8 (1-29)||(41307991-41308019)
[»] chr6 (1 HSPs)
chr6 (1-33)||(18668927-18668959)
[»] chr1 (1 HSPs)
chr1 (1-29)||(6766367-6766395)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 37900879 - 37901065
Alignment:
Q  2 tgtattttgaaacggagggagtatatgattaatgaatataattaatgagttttaacatattgtcatactcattaatcatcaattgaacctaatcatttaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37900879 tgtattttgaaacggagggagtatatgattaatgaatataactaatgagttgtaacatattgtcatactcattaatcatcaattgaacctaatcatttaa 37900978  T
Q  102 attgttatcctaaatttgttgtcaaatatttgtgtatcatttctatttgttttaagccatttctcattttcttctatatgaatgtat 188  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37900979 attgttgtcctaaatttgttgtcaaatatttgtgtatcatttctatttgttttaagccatttctcattttcttctatatgtatgtat 37901065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 40494623 - 40494653
Alignment:
Q  1 atgtattttgaaacggagggagtatatgatt 31  Q
    |||||||||||||||||||||||||||||||    
T  40494623 atgtattttgaaacggagggagtatatgatt 40494653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41307991 - 41308019
Alignment:
Q  1 atgtattttgaaacggagggagtatatga 29  Q
    |||||||||||||||||||||||||||||    
T  41307991 atgtattttgaaacggagggagtatatga 41308019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18668927 - 18668959
Alignment:
Q  1 atgtattttgaaacggagggagtatatgattaa 33  Q
    ||||||||||||||||||||||||||| |||||    
T  18668927 atgtattttgaaacggagggagtatattattaa 18668959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6766395 - 6766367
Alignment:
Q  1 atgtattttgaaacggagggagtatatga 29  Q
    |||||||||||||||||||||||||||||    
T  6766395 atgtattttgaaacggagggagtatatga 6766367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University