View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8382_high_5 (Length: 463)
Name: NF8382_high_5
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 4 - 448
Target Start/End: Complemental strand, 5328714 - 5328270
Alignment:
| Q |
4 |
ttttgaggatttgttgtttttattagaagaacaagaaaaataaacatgagatttcaatcactctagtagtcaattcctagttacactaacctcattctct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5328714 |
ttttgaggatttgttgtttttattagaagaacaagaaaaataaacatgtgatttcaatcactcttgtagtcaattcctagttacaccaacctcattctct |
5328615 |
T |
|
| Q |
104 |
ttactatatgagtatacaatgttttattttgagaataacactagcctaattctcattactatctgtctatacacattgttgtgcacacaaatagcgcata |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5328614 |
ttactatatgtgtatacaatgttttattttgagaataacactagcctaattctcattactatccgtctatatacattgttgtgcacacaaatagcgcata |
5328515 |
T |
|
| Q |
204 |
gagaagaaacttccttatcattacatcattcacaaaaacgacaacaaccaaactgcaagggaactcttcgagcaaaagcacgaacaacttctgaaggatg |
303 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5328514 |
gagaagaaacttccttatcattacgtcattcacaaaaacgacaacaaccaaactgcaagggaactcttcgagcaaaagcacgaacaacttctgaaggatg |
5328415 |
T |
|
| Q |
304 |
ctcgtgaatggataaaagggacagcccagtcatgttcagcggtagctgtccttgtcgcgacagttgtctttgcggcagcttacactgtccctggaggcac |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5328414 |
ctcgtgaatggataaaagggacagcccagtcatgttctgcggtagctgcccttgtcgcgacagttgtctttgcggcagcttacactgtcccgggaggcac |
5328315 |
T |
|
| Q |
404 |
agacgaccgcggcttcccaaggttactccatcatcctatatttgt |
448 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5328314 |
agacgaccacggcttcccaaggttactccatcatcctatatttgt |
5328270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 139 - 445
Target Start/End: Original strand, 5317033 - 5317338
Alignment:
| Q |
139 |
taacactagcctaattctcattactatctgtctatacacattgttgtgcacaca--aatagcgcatagagaagaaacttccttatcattacatcattcac |
236 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
5317033 |
taacactaatctaattctcattactatctatctataca---tgttgtgcacacataaatagcgcatagagaagcgacttccttatcattatgtcattcac |
5317129 |
T |
|
| Q |
237 |
aaaaacgacaacaaccaaactgcaagggaactcttcgagcaaaagcacgaacaacttctgaaggatgctcgtgaatggataaaagggacagcccagtcat |
336 |
Q |
| |
|
|| ||| |||||||||||||||| ||||||||||||||| |||| || |||||||| |||||||||||||| |||||||| |||| |||||| ||||||| |
|
|
| T |
5317130 |
aagaacaacaacaaccaaactgctagggaactcttcgaggaaaaacatgaacaactgctgaaggatgctcgcgaatggatcaaagagacagctcagtcat |
5317229 |
T |
|
| Q |
337 |
gttcagcggtagctgtccttgtcgcgacagttgtctttgcggcagcttacactgtccctggaggcacagacgaccgcggcttcccaaggttactccatca |
436 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||| |||||| ||||| ||||| ||||| |
|
|
| T |
5317230 |
gttctgcggtagctgtccttgttgcgacagttgtctttgcagctgcttacacggtcccaggaggcacagacgactacggcttgccaagattacttcatca |
5317329 |
T |
|
| Q |
437 |
tcctatatt |
445 |
Q |
| |
|
||||||||| |
|
|
| T |
5317330 |
tcctatatt |
5317338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University