View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_1 (Length: 1038)
Name: NF8382_low_1
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 79 - 529
Target Start/End: Original strand, 36569171 - 36569612
Alignment:
| Q |
79 |
acaataaccatattgaagattaaaaataatcatttgaagcacagataaaactgcaaattttattgaaaaaccttttagtaattgttttgctaaagtgaat |
178 |
Q |
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| T |
36569171 |
acaattaccatattgaagattaaaaataatcatttgaagcacagataaaactgcaaattttattgaaaaaccttttagtaattgttttgctaaagtgaat |
36569270 |
T |
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| Q |
179 |
tgaacatcagatggattcataccggaaattttatcgaaaaaacctttctattgattgctttgcaagagcaaatcatagattcatattgtatggttggttt |
278 |
Q |
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| T |
36569271 |
tgaacatcagatggattcataccggaaattttatcgaaaaaacttttctattgattgctttgcaagagcaaatcatagattcatattgtatggttggttt |
36569370 |
T |
|
| Q |
279 |
cataacgtggaggtgtgaagcagagatgtgggataatagtgggaggacaaaaacaattgataaccaaagctctttatagttatagtggtaaaaggtacgt |
378 |
Q |
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| T |
36569371 |
cataacgtggaggtgtgaagcagagatgtgggataatagtgggaggacaaaaacaattgataaccaaagctctttatagttatagtggtaaaaggtacgt |
36569470 |
T |
|
| Q |
379 |
aagataagatggaaggggaaaaattgaaatgaattgnnnnnnnnnnggacaaaatatgaaaattaaggtttgcacgagcatgactatcatccatttacga |
478 |
Q |
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| T |
36569471 |
aagataagagggaaggggaaaaattgaaatgaattg-aaaaaaaaaggacaaaatatgaaaattaaggtttgcacgagcatgactatcatccatttacga |
36569569 |
T |
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| Q |
479 |
ataatagatagatagatagattcacagcactaaaattcttagttcataatt |
529 |
Q |
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| T |
36569570 |
ata--------atagatagattcacagcactaaaattcttagttcataatt |
36569612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 584 - 1025
Target Start/End: Original strand, 36570073 - 36570536
Alignment:
| Q |
584 |
caatcgcccccataaatatcaaacaatttcaaccttattgcctatatcttctatccttccacctaaatttttccaacctgtcttggctacttcttgggat |
683 |
Q |
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| T |
36570073 |
caatcgcccccataaatatcaaacaatctcaaccttattgcctatatcttctatccttccacctaaatttttccaacctgtcttggctacttcttaggat |
36570172 |
T |
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| Q |
684 |
catctcatatatcttgcaatattaggaaacttgattgcttgtacttcataatcatattacggaaaagatactatccctgac------------------- |
764 |
Q |
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| T |
36570173 |
catctcatatatcttgcaatattaggaaacttgattgcttgtacttcataatcatattacggaaaagatactatccctgactccttgttggtggtgatga |
36570272 |
T |
|
| Q |
765 |
-tccagttcatgtttcttgcctggaaccatctactctttctcgtaaaatgttccttttgctcttaagaatcttcttatcttagttcataggtgacaatta |
863 |
Q |
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| T |
36570273 |
ctccagttcatgtttcttgcctggaaccatctactctttctcgcaaaatgttccttttgctcttaagaatcttcttatcttagttcataggtgacaatta |
36570372 |
T |
|
| Q |
864 |
gtgtgcagcgtataacaaataaaaaatttagtgcacggaaggaaaatgaactaagaatccattaacagtctccttagaatct--acagtgtcataccaaa |
961 |
Q |
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| T |
36570373 |
gtgtgcagcgtataacaaacaaaaaatttagtgcacggaaggaaaatgaactaagaatccattaacattctccttagaatctacacagtgtcataccaaa |
36570472 |
T |
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| Q |
962 |
cttttcactccatcctttgttatcaaggatctgcagtgtataataaacaaaaatttccactgat |
1025 |
Q |
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| T |
36570473 |
cttttcactccatcctttgttatcaaggatctgcagtgtataataaacaaaaatttccactgat |
36570536 |
T |
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