View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_12 (Length: 406)
Name: NF8382_low_12
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 26 - 384
Target Start/End: Original strand, 47560969 - 47561327
Alignment:
| Q |
26 |
tttggtgtttcaacgctcttgactcatggagaatttggaattcgccatgcactcaagcagccaaataatttggattctggcgttgacttttatgtgactc |
125 |
Q |
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| T |
47560969 |
tttggtgtttcaacgctcttgactcatggagaatttggaattcgccatgcactcaagcagccaaataatttggattctggcgttgacttttatgtgactc |
47561068 |
T |
|
| Q |
126 |
tgttaatgctatgttgtcaacttgtcatctacaaactttcaaatactttcctcattgcttatatggttatttaatatattctgtaaatcatgtaggcagc |
225 |
Q |
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| T |
47561069 |
tgttaatgctatgttgtcaacttgtcatctacaaactttcaaatactttcctcattgcttatatggttatttaatatattttgtaaatcatgtaggcagc |
47561168 |
T |
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| Q |
226 |
aaaggagtttgagtctgagcttaaaaaggaaccagattcctcaggaggggagccatctgaaaaatcaattgctgttagcgaagagaagaagcaagatact |
325 |
Q |
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| T |
47561169 |
aaaggagtttgagtctgagcttaaaaaggaaccaggttcctcaggaggggagccatctgaaaaatcaattgctgttagcgaagagaagaagcaagatact |
47561268 |
T |
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| Q |
326 |
gaggtgtctagttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagta |
384 |
Q |
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| T |
47561269 |
gaggtgtctagttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagta |
47561327 |
T |
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Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 207 - 384
Target Start/End: Original strand, 38969234 - 38969408
Alignment:
| Q |
207 |
tgtaaatcatgtaggcagcaaaggagtttgagtctgagcttaaaaaggaaccagattcctcaggaggggagccatctgaaaaatcaattgctgttagcga |
306 |
Q |
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| T |
38969234 |
tgtaaatcatgtaggcagcaaaggagtttgagtctgagcttaaaaatgacccagattccacaggagaggagccatctgagaaatc---tactgtgagcga |
38969330 |
T |
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| Q |
307 |
agagaagaagcaagatactgaggtgtctagttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagta |
384 |
Q |
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|||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38969331 |
agaggagaagcaagacacagaggtaactagttctaaggagagtgtatgacatttgtaatagatgtgatatgataagta |
38969408 |
T |
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