View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8382_low_15 (Length: 363)
Name: NF8382_low_15
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 35110998 - 35111345
Alignment:
| Q |
1 |
tactacaaggtaatgtgcttatcaaaatacaaacctttcccaatacctttttgtcaatgttgttcaatcatatagttaaaccaaccttcattggcattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35110998 |
tactacaaggtaatgtgcttatcaaaatacaaacctttcccaatacctttttgtcaatgttgttcaatcatatagttaaaccaaccttcattggcattca |
35111097 |
T |
|
| Q |
101 |
tgaaacatcaaacaccttttacatgatattcaaacaaccctgtcaaaagtataggagtctataagcgtagcgtatttcacaattcataggcacatcatgt |
200 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35111098 |
tgacacatcaaacaccttttccatgatattcaaacaaccctgtcaaaagtataggagtctataagcgtagcgtatttcacaattcataggcacatcatgt |
35111197 |
T |
|
| Q |
201 |
gattttattgatgttttctggatgaagtcatgatagttacgtgtcctattattgcattagaatccattagctacaaaccaggccttggataaggatggct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35111198 |
gattttattgatgttttctggatgaagtcatgatagttacgtgtcctattattgcattagaatccattagctacaaaccaggccttggataaggatggct |
35111297 |
T |
|
| Q |
301 |
ggctgaatactggtgatctagggtggattgctccccatcattctactg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35111298 |
ggctgaatactggtgatctagggtggattgctccccatcattctactg |
35111345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 332
Target Start/End: Complemental strand, 38129207 - 38129121
Alignment:
| Q |
246 |
ctattattgcattagaatccattagctacaaaccaggccttggataaggatggctggctgaatactggtgatctagggtggattgct |
332 |
Q |
| |
|
||||| ||| || ||||||| | ||| ||||| |||||| | || |||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
38129207 |
ctattcttgtatcagaatccttcagccacaaatcaggccatagacaaggatggctggctgaatactggtgacataggttggattgct |
38129121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 38118870 - 38118769
Alignment:
| Q |
247 |
tattattgcattagaatccattagctacaaaccaggccttggataaggatggctggctgaatactggtgatctagggtggattgctccccatcattctac |
346 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||| | || | | |||| ||||||||||| ||||||||||| |||| ||||||||| |||| ||||| || |
|
|
| T |
38118870 |
tattcttgcatcagaatcctttagctacaaatcgggtcattgatagtgatggctggctaaatactggtgacataggttggattgctgcccaccattcaac |
38118771 |
T |
|
| Q |
347 |
tg |
348 |
Q |
| |
|
|| |
|
|
| T |
38118770 |
tg |
38118769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University