View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8382_low_19 (Length: 309)

Name: NF8382_low_19
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8382_low_19
NF8382_low_19
[»] chr5 (18 HSPs)
chr5 (1-300)||(9590797-9591078)
chr5 (150-235)||(35850845-35850930)
chr5 (183-247)||(8096487-8096551)
chr5 (185-248)||(13421966-13422029)
chr5 (186-247)||(31315942-31316003)
chr5 (186-246)||(1409533-1409593)
chr5 (172-232)||(6216947-6217007)
chr5 (172-231)||(14726440-14726499)
chr5 (172-231)||(31391732-31391791)
chr5 (256-291)||(39567279-39567314)
chr5 (172-247)||(41630536-41630611)
chr5 (185-235)||(24229776-24229826)
chr5 (256-294)||(31802511-31802549)
chr5 (185-235)||(38007404-38007454)
chr5 (170-247)||(10722795-10722872)
chr5 (256-293)||(38111020-38111057)
chr5 (73-157)||(9606647-9606731)
chr5 (256-300)||(42886473-42886517)
[»] chr8 (16 HSPs)
chr8 (49-157)||(6455752-6455858)
chr8 (180-241)||(20227266-20227327)
chr8 (150-235)||(45445766-45445851)
chr8 (185-247)||(16247213-16247275)
chr8 (150-235)||(14544858-14544943)
chr8 (191-247)||(44091749-44091805)
chr8 (156-247)||(5333466-5333557)
chr8 (94-157)||(6449285-6449348)
chr8 (256-290)||(1236766-1236800)
chr8 (256-290)||(1239466-1239500)
chr8 (185-231)||(7883231-7883277)
chr8 (256-294)||(8443581-8443619)
chr8 (185-235)||(33214661-33214711)
chr8 (185-235)||(37971332-37971382)
chr8 (186-247)||(36948428-36948489)
chr8 (183-247)||(18847127-18847191)
[»] chr4 (18 HSPs)
chr4 (183-246)||(9178409-9178472)
chr4 (172-247)||(8670540-8670615)
chr4 (185-247)||(10496390-10496452)
chr4 (155-247)||(52060885-52060977)
chr4 (172-247)||(17949303-17949378)
chr4 (172-247)||(17953155-17953230)
chr4 (172-247)||(54021915-54021990)
chr4 (186-232)||(40066048-40066094)
chr4 (185-235)||(53444185-53444235)
chr4 (172-244)||(21662495-21662567)
chr4 (172-244)||(21671259-21671331)
chr4 (256-291)||(28857404-28857439)
chr4 (184-247)||(36194764-36194827)
chr4 (185-247)||(10258888-10258950)
chr4 (185-235)||(24099059-24099109)
chr4 (149-247)||(27651999-27652097)
chr4 (256-300)||(18138953-18138997)
chr4 (256-300)||(49126166-49126210)
[»] chr1 (14 HSPs)
chr1 (172-247)||(1742319-1742394)
chr1 (185-247)||(23291634-23291696)
chr1 (191-247)||(30506170-30506226)
chr1 (172-235)||(34878257-34878320)
chr1 (185-247)||(13144804-13144866)
chr1 (185-247)||(27456578-27456640)
chr1 (183-247)||(31919026-31919090)
chr1 (248-291)||(16161819-16161862)
chr1 (185-236)||(35484383-35484434)
chr1 (185-247)||(10776453-10776515)
chr1 (185-247)||(44915677-44915739)
chr1 (172-245)||(7836775-7836848)
chr1 (172-232)||(14872692-14872752)
chr1 (172-244)||(36775689-36775761)
[»] chr3 (13 HSPs)
chr3 (185-247)||(35864924-35864986)
chr3 (185-235)||(48650726-48650776)
chr3 (172-235)||(9797513-9797576)
chr3 (248-291)||(42460727-42460770)
chr3 (170-235)||(32701537-32701602)
chr3 (155-247)||(21289776-21289868)
chr3 (172-247)||(33579914-33579989)
chr3 (185-247)||(21313070-21313132)
chr3 (185-235)||(36461423-36461473)
chr3 (185-235)||(45425638-45425688)
chr3 (185-247)||(48199811-48199873)
chr3 (185-235)||(53099836-53099886)
chr3 (256-289)||(26739429-26739462)
[»] chr2 (17 HSPs)
chr2 (185-247)||(18763513-18763575)
chr2 (172-232)||(12677430-12677490)
chr2 (155-235)||(19028877-19028957)
chr2 (172-235)||(1415614-1415677)
chr2 (172-247)||(29173700-29173774)
chr2 (191-291)||(14416163-14416261)
chr2 (155-247)||(4904108-4904200)
chr2 (172-247)||(30400015-30400090)
chr2 (172-235)||(33923762-33923825)
chr2 (185-235)||(7677866-7677916)
chr2 (185-235)||(8809337-8809387)
chr2 (256-294)||(12647993-12648031)
chr2 (185-235)||(31210600-31210650)
chr2 (185-247)||(36175489-36175551)
chr2 (186-247)||(31128774-31128835)
chr2 (248-293)||(37416700-37416745)
chr2 (191-247)||(25509067-25509123)
[»] scaffold0445 (1 HSPs)
scaffold0445 (150-247)||(1379-1476)
[»] chr6 (11 HSPs)
chr6 (172-248)||(30608494-30608570)
chr6 (185-247)||(11321461-11321523)
chr6 (172-246)||(4010491-4010564)
chr6 (185-247)||(29255438-29255500)
chr6 (180-246)||(31575494-31575560)
chr6 (172-235)||(127717-127780)
chr6 (172-235)||(12170516-12170579)
chr6 (185-247)||(30894636-30894698)
chr6 (186-235)||(3913567-3913616)
chr6 (170-231)||(23128670-23128731)
chr6 (256-292)||(22571456-22571492)
[»] scaffold0136 (1 HSPs)
scaffold0136 (172-247)||(10021-10096)
[»] chr7 (19 HSPs)
chr7 (180-241)||(44311779-44311840)
chr7 (172-247)||(37837437-37837512)
chr7 (172-235)||(39328769-39328832)
chr7 (185-235)||(38798830-38798880)
chr7 (171-248)||(22087353-22087430)
chr7 (150-247)||(24770283-24770380)
chr7 (186-247)||(45349792-45349853)
chr7 (183-231)||(25287176-25287224)
chr7 (248-291)||(22742924-22742967)
chr7 (248-291)||(24350905-24350948)
chr7 (172-247)||(38880557-38880632)
chr7 (185-247)||(5348584-5348646)
chr7 (185-247)||(5792833-5792895)
chr7 (185-235)||(8001538-8001588)
chr7 (185-235)||(9450129-9450179)
chr7 (185-247)||(46700072-46700134)
chr7 (185-235)||(48316804-48316854)
chr7 (172-245)||(22742983-22743056)
chr7 (195-247)||(29844901-29844953)
[»] scaffold0049 (1 HSPs)
scaffold0049 (172-247)||(71279-71354)
[»] scaffold0618 (1 HSPs)
scaffold0618 (191-247)||(8105-8161)
[»] scaffold0121 (1 HSPs)
scaffold0121 (183-235)||(31264-31316)
[»] scaffold0017 (1 HSPs)
scaffold0017 (185-235)||(32739-32789)
[»] scaffold0026 (1 HSPs)
scaffold0026 (170-235)||(71841-71906)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 9590797 - 9591078
Alignment:
Q  1 tacgccaaaagggcgttacaggccttccaaaagtttggaatagtcatagaggaacaaaatgattctagtttcaaaaatcgatatgggccagctcaattgc 100  Q
    |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9590797 tacgccaaaagggcattacaagccttccaaaagtttggaataatcatagaggaacaaaatgattctagtttcaaaaatcgatatgggccagctcaattgc 9590896  T
Q  101 cctacactttgcccattcgttctggtgaagaagggttaacttttagaggaattcccatgcttctatatttacaacgttaacactcaaattattgattgaa 200  Q
    ||||||||||||||||                  ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  9590897 cctacactttgcccat------------------gttaacttttagaggaattcccatgctacaatatctacaacgttaacactcaaattattgattgaa 9590978  T
Q  201 tttgtaattgatttatgccgatctttcaataggaatcaaacgaacacatgtgaagtcaaacaacgccgcacaagacaatgaacaacacaacaccaaactc 300  Q
    ||||||||||| |||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9590979 tttgtaattgacttatgccgatatttcaataagaactaaacgaacacatgtgaagtcaaacaacgccgcacaagacaatgaacaacacaacaccatactc 9591078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 35850930 - 35850845
Alignment:
Q  150 aattcccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||||||||  || | ||||||| || | ||||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  35850930 aattcacatgcttctggatcttcaacgttgacgcacaaatcattggttgaatttgtaattgactgatgccgatctttcaataggaa 35850845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 8096487 - 8096551
Alignment:
Q  183 ctcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| |||| ||||| |||||||||||| ||||| |||||||||||||||  ||||||||||    
T  8096487 ctcaaatcattggttgaaattgtaattgattgatgccaatctttcaataggaactaaacgaacac 8096551  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 13422029 - 13421966
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacaca 248  Q
    ||||| ||||||||||||||||||||| | ||| |||||||||||||||||  ||| |||||||    
T  13422029 caaatcattgattgaatttgtaattgactgatgtcgatctttcaataggaactaaatgaacaca 13421966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 31316003 - 31315942
Alignment:
Q  186 aaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||||||||||||||| ||| ||||||| | || |||||||||||| ||||||||| |||||    
T  31316003 aaattattgattgaatatgttattgattgaagctgatctttcaatatgaatcaaacaaacac 31315942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 1409593 - 1409533
Alignment:
Q  186 aaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaaca 246  Q
    |||| ||||||||||||||||||||||| ||| |||||||| |||| |||  |||||||||    
T  1409593 aaatcattgattgaatttgtaattgattgatgtcgatcttttaatatgaactaaacgaaca 1409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 6217007 - 6216947
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaatag 232  Q
    ||||||| || | ||||| ||||||||||||||||||||||| |||  |||||||||||||    
T  6217007 caacgttgacgcccaaatcattgattgaatttgtaattgattgatgtagatctttcaatag 6216947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 14726440 - 14726499
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaata 231  Q
    ||||||| |||| ||||| |||| |||||||||| ||||| | |||||||||||||||||    
T  14726440 caacgttgacacccaaatcattggttgaatttgtgattgactgatgccgatctttcaata 14726499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 31391732 - 31391791
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaata 231  Q
    ||||||| || | ||||| |||| |||||||||||||||| | |||||||||||||||||    
T  31391732 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaata 31391791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 39567314 - 39567279
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaac 291  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39567314 tcaaacaacgccgcacaagacaacgaacaacacaac 39567279  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 41630611 - 41630536
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || | ||||| ||||||||||||||||||||| | | | |||||||| ||||||||  ||||||||||    
T  41630611 caacgttgacgcccaaatcattgattgaatttgtaattgactgaagtcgatcttttaataggaactaaacgaacac 41630536  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 24229776 - 24229826
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  24229776 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 24229826  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 31802511 - 31802549
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaacacc 294  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  31802511 tcaaacaacgccgcacaagacagcgaacaacacaacacc 31802549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 38007454 - 38007404
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| || ||||||||||||| | |||||||||||||||||||||    
T  38007454 caaatcattggttaaatttgtaattgactgatgccgatctttcaataggaa 38007404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 10722872 - 10722795
Alignment:
Q  170 tacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||||| || | ||||| ||||||||||||| ||| ||| | | | |||||||||||||||||  ||||||||||    
T  10722872 tacaacgttgacgcccaaatcattgattgaatttttaaatgactgaagtcgatctttcaataggaactaaacgaacac 10722795  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 38111020 - 38111057
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaacac 293  Q
    |||||||||||||||||||||||  |||||||||||||    
T  38111020 tcaaacaacgccgcacaagacaacaaacaacacaacac 38111057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 9606647 - 9606731
Alignment:
Q  73 aaaaatcgatatgggccagctcaattgccctacactttgcccattcgttctggtgaagaagggttaacttttagaggaattccca 157  Q
    |||||||||  |||||| |  ||||||||||| |||||||    ||||||| ||||||| || ||||| ||||||||||||||||    
T  9606647 aaaaatcgaactgggccggtgcaattgccctatactttgcttcatcgttctagtgaagatggattaacctttagaggaattccca 9606731  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 42886517 - 42886473
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaacaccaaactc 300  Q
    ||||||||||||||||||||| | |||||||||| ||||| ||||    
T  42886517 tcaaacaacgccgcacaagacgacgaacaacacaccaccacactc 42886473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 6455858 - 6455752
Alignment:
Q  49 gaggaacaaaatgattctagtttcaaaaatcgatatgggccagctcaattgccctacactttgcccattcgttctggtgaagaagggttaacttttagag 148  Q
    ||||||||||  ||||||||||| ||||| ||   ||| |||| | |||||||||||||||||| | |||||||  |||||||||| |||||||||||||    
T  6455858 gaggaacaaa--gattctagtttgaaaaaccgcactggaccagttgaattgccctacactttgctccttcgttcaagtgaagaaggtttaacttttagag 6455761  T
Q  149 gaattccca 157  Q
    |||||||||    
T  6455760 gaattccca 6455752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 20227266 - 20227327
Alignment:
Q  180 acactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaac 241  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||||| ||||| || |||||    
T  20227266 acacccaaattattgattgaatttgtaattgacttaagccgatcttttaatagaaaccaaac 20227327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 45445766 - 45445851
Alignment:
Q  150 aattcccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| ||||||||   |||| ||||||| || | ||||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  45445766 aattcacatgcttccggattttcaacgttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaataggaa 45445851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 16247213 - 16247275
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||||||||||| ||| ||| ||||||||| |||||||  ||||||||||    
T  16247213 caaatcattgattgaatttgtaattaattgatgtcgatctttccataggaactaaacgaacac 16247275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 14544858 - 14544943
Alignment:
Q  150 aattcccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||||||||||   || | ||||||| || | ||||| ||||||| || |||||||||||| ||| |||||||||||||||||    
T  14544858 aattcccatgcttccggatctgcaacgttgacgcccaaataattgatttaacttgtaattgattgatgtcgatctttcaataggaa 14544943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 44091749 - 44091805
Alignment:
Q  191 attgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||||||||||||||| |||||| ||| ||||||||||| |||||  ||||||||||    
T  44091749 attgattgaatttgtatttgattgatgtcgatctttcaacaggaactaaacgaacac 44091805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 5333557 - 5333466
Alignment:
Q  156 catgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||||||||  || ||||||||| || | ||||| ||||||||||| ||| ||||| | | |  |||||||||||||||| |||||||||||    
T  5333557 catgcttctggatctacaacgttgacgcccaaataattgattgaatatgtgattgactgaagttgatctttcaataggaaccaaacgaacac 5333466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 6449348 - 6449285
Alignment:
Q  94 caattgccctacactttgcccattcgttctggtgaagaagggttaacttttagaggaattccca 157  Q
    |||||||||||||||||||   |||||||  |||||||||| ||||| || |||||||||||||    
T  6449348 caattgccctacactttgctacttcgttcaagtgaagaaggtttaacattcagaggaattccca 6449285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 1236766 - 1236800
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaa 290  Q
    ||||||||||||||||||||||| |||||||||||    
T  1236766 tcaaacaacgccgcacaagacaacgaacaacacaa 1236800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 1239466 - 1239500
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaa 290  Q
    ||||||||||||||||||||| |||||||||||||    
T  1239466 tcaaacaacgccgcacaagacgatgaacaacacaa 1239500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 7883231 - 7883277
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaata 231  Q
    |||||||||| |||||||||||||||||| |||  ||||||||||||    
T  7883231 caaattattgcttgaatttgtaattgattaatgtagatctttcaata 7883277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 8443581 - 8443619
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaacacc 294  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  8443581 tcaaacaacgccgcacaagacgacgaacaacacaacacc 8443619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 33214661 - 33214711
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||| | | |||||||||||||||||||    
T  33214661 caaatcattggttgaatttgtaattgactgacgccgatctttcaataggaa 33214711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 37971382 - 37971332
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  37971382 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 37971332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 36948428 - 36948489
Alignment:
Q  186 aaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||| ||||||||||||||||||||| | ||| | || ||||||||||||| |||| |||||    
T  36948428 aaatcattgattgaatttgtaattgactgatgtcaatttttcaataggaattaaacaaacac 36948489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 18847127 - 18847191
Alignment:
Q  183 ctcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| ||||||||||| || |||| | | |||| || ||||||||||||| |||||||||||    
T  18847127 ctcaaatcattgattgaatctgcaattaactgatgctgacctttcaataggaaccaaacgaacac 18847191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 9178472 - 9178409
Alignment:
Q  183 ctcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaaca 246  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||||||||||  |||||||||    
T  9178472 ctcaaattattgattggatttgtaattgattgatgtcgatctttcaataggaactaaacgaaca 9178409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 8670615 - 8670540
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || | ||||| |||| |||||||||||||||| | |||||||||||||||||||||  ||||||||||    
T  8670615 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaataggaaataaacgaacac 8670540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 10496452 - 10496390
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||| |||||||||||||||| | |||||||||||||||||||||  ||||||||||    
T  10496452 caaatcattggttgaatttgtaattgactgatgccgatctttcaataggaactaaacgaacac 10496390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 52060885 - 52060977
Alignment:
Q  155 ccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||||||| || |||||| | ||| | ||||| ||||||||||| ||||||||| | | |  ||||||||||||||||| ||||||||||    
T  52060885 ccatgcttctagatctacaacatcaacgcccaaatcattgattgaatctgtaattgactgaagttgatctttcaataggaattaaacgaacac 52060977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 17949303 - 17949378
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || ||| ||| |||| |||||||||||||||| | |||  ||||||||||||||||| ||||||||||    
T  17949303 caacgttgacgctccaatcattggttgaatttgtaattgactgatgtagatctttcaataggaattaaacgaacac 17949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 17953155 - 17953230
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || ||| ||| |||| |||||||||||||||| | |||  ||||||||||||||||| ||||||||||    
T  17953155 caacgttgacgctccaatcattggttgaatttgtaattgactgatgtagatctttcaataggaattaaacgaacac 17953230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 54021990 - 54021915
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| |||  ||||| ||||||| ||||||||||||| | ||| |||||||||||||||||  ||||||||||    
T  54021990 caacgttgacatccaaatcattgattcaatttgtaattgactgatgtcgatctttcaataggaactaaacgaacac 54021915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 40066048 - 40066094
Alignment:
Q  186 aaattattgattgaatttgtaattgatttatgccgatctttcaatag 232  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  40066048 aaattattgattgaatttgtaattgattaatgtcgatctttccatag 40066094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 53444235 - 53444185
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  53444235 caaatcattggttgaatttgtaattgactgatgccgatctttcaataggaa 53444185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 21662567 - 21662495
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaa 244  Q
    ||||||| || ||||||| |||||||| |||||||||||| | |||  ||||||||||||||||  |||||||    
T  21662567 caacgttgacgctcaaatcattgattggatttgtaattgactgatgttgatctttcaataggaactaaacgaa 21662495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 21671331 - 21671259
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaa 244  Q
    ||||||| || ||||||| |||||||| |||||||||||| | |||  ||||||||||||||||  |||||||    
T  21671331 caacgttgacgctcaaatcattgattggatttgtaattgactgatgttgatctttcaataggaactaaacgaa 21671259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 28857439 - 28857404
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaac 291  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28857439 tcaaacaacgccgcacaagacaacgaacaacacaac 28857404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 36194827 - 36194764
Alignment:
Q  184 tcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||||| ||||||||||||||| |||| || | || |||||||||||| ||| |||||||||||    
T  36194827 tcaaatcattgattgaatttgtgattgtttgaagctgatctttcaatacgaaccaaacgaacac 36194764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 10258888 - 10258950
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||||||||||||| | ||| ||||||||||| | |||  ||||||||||    
T  10258888 caaatcattgattgaatttgtaattgactaatgtcgatctttcaacatgaactaaacgaacac 10258950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 24099059 - 24099109
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  24099059 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 24099109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 27652097 - 27651999
Alignment:
Q  149 gaattcccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||| |||||||||||  || | ||||||| | || ||||| ||||||||||||||| ||||  | | || |||||||||||| ||| |||||||||||    
T  27652097 gaatacccatgcttctggatctgcaacgttgatacccaaatcattgattgaatttgtgattgtctaaagctgatctttcaatacgaaccaaacgaacac 27651999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 18138953 - 18138997
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaacaccaaactc 300  Q
    ||||||||||||||||||||| | |||||||||| ||||| ||||    
T  18138953 tcaaacaacgccgcacaagacgacgaacaacacaccaccacactc 18138997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 49126166 - 49126210
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaacaccaaactc 300  Q
    ||||||||||||||||||||| | |||||||||| ||||| ||||    
T  49126166 tcaaacaacgccgcacaagacgacgaacaacacaccaccacactc 49126210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 1742394 - 1742319
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || | ||||| |||| |||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  1742394 caacgttgacgcccaaatcattggttgaatttgtaattgattgatgccgatctttcaataggaaataaacgaacac 1742319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 23291634 - 23291696
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||| |||||||||||||||| | |||||||||||||||||||||  ||||||||||    
T  23291634 caaatcattggttgaatttgtaattgactgatgccgatctttcaataggaaataaacgaacac 23291696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 30506170 - 30506226
Alignment:
Q  191 attgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||||||| || |||||||| | ||||||||||||||||||| |||||||||||    
T  30506170 attgattgaatctgcaattgattcaagccgatctttcaataggaagcaaacgaacac 30506226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 34878257 - 34878320
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||| || | ||||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  34878257 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaataggaa 34878320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 13144804 - 13144866
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||||||||||||||| | | || |||||||||| |||||||| ||||||    
T  13144804 caaatcattgattgaatttgtaattgattaaagtcggtctttcaatatgaatcaaatgaacac 13144866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 27456640 - 27456578
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||||||||| |||||||||| | ||| |||||||||||||||||  ||||||||||    
T  27456640 caaatcattgattgaacttgtaattgactgatgtcgatctttcaataggaactaaacgaacac 27456578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 31919090 - 31919026
Alignment:
Q  183 ctcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| |||||||||| |||||||||| | ||| ||||||||||| |||||  ||||||||||    
T  31919090 ctcaaatcattgattgaacttgtaattgactgatgtcgatctttcaacaggaactaaacgaacac 31919026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 16161862 - 16161819
Alignment:
Q  248 atgtgaagtcaaacaacgccgcacaagacaatgaacaacacaac 291  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||    
T  16161862 atgtgaaatcaaacaacgccgcacaagacgacgaacaacacaac 16161819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 35484383 - 35484434
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaat 236  Q
    ||||| |||| |||||||||||||||||| |||  |||||||||||||||||    
T  35484383 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaat 35484434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 10776453 - 10776515
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||||||| |||||||||||| | ||| ||||||||||| |||||  ||||||||||    
T  10776453 caaatcattgattggatttgtaattgactgatgtcgatctttcaaaaggaagtaaacgaacac 10776515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 44915739 - 44915677
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||||||||||||| | |||  |||||||||||| |||  ||||||||||    
T  44915739 caaatcattgattgaatttgtaattgactgatgttgatctttcaatatgaactaaacgaacac 44915677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 7836775 - 7836848
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaac 245  Q
    ||||||| || | ||||| |||| |||||||||||||||| | ||| ||||||||| |||||||  ||||||||    
T  7836775 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcgataggaaataaacgaac 7836848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 14872752 - 14872692
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaatag 232  Q
    ||||||| || | ||||| |||| |||||||||||||||| | ||| ||||||||||||||    
T  14872752 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaatag 14872692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 36775689 - 36775761
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaa 244  Q
    ||||||| || | ||||| ||||||||||||||| ||||  | | ||||||||||||||| ||| ||||||||    
T  36775689 caacgttgacgcccaaatcattgattgaatttgtgattgtctgaagccgatctttcaatacgaaccaaacgaa 36775761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 35864924 - 35864986
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||||  ||||||||||    
T  35864924 caaatcattgattgaatttgtaattgattgatgtcgatctttcaataggaactaaacgaacac 35864986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 48650726 - 48650776
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  48650726 caaattattggttgaatttgtaattgattgatgcagatctttcaataggaa 48650776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 9797513 - 9797576
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||||||  |||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  9797513 caacgttaacgttcaaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 9797576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 42460770 - 42460727
Alignment:
Q  248 atgtgaagtcaaacaacgccgcacaagacaatgaacaacacaac 291  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  42460770 atgtgaaatcaaacaacgccgcacaagacgatgaacaacacaac 42460727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 32701602 - 32701537
Alignment:
Q  170 tacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||||| || | ||||| |||||||||||||||||||| || |||  ||||||||||||||||    
T  32701602 tacaacgttgacgcccaaatcattgattgaatttgtaattggttgatgtagatctttcaataggaa 32701537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 21289776 - 21289868
Alignment:
Q  155 ccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||||||| || | ||||||| ||||  |||| ||||||||||||||| ||||  | | || |||||||||||| ||| |||||||||||    
T  21289776 ccatgcttctagatctgcaacgttgacaccaaaatcattgattgaatttgtgattgtctgaagctgatctttcaatacgaaccaaacgaacac 21289868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 33579989 - 33579914
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || | ||||| |||| |||||||||||||||| | ||| ||||||||||||| |||  ||||||||||    
T  33579989 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaatatgaaataaacgaacac 33579914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 21313132 - 21313070
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||||||||||||| | || ||||| ||||||||| ||  ||||||||||    
T  21313132 caaatcattgattgaatttgtaattgactgataccgatatttcaatagaaactaaacgaacac 21313070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 36461423 - 36461473
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  36461423 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 36461473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 45425688 - 45425638
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| ||||||||||||||||||||||| ||  |||||||||||| ||||    
T  45425688 caaatcattgattgaatttgtaattgattgatttcgatctttcaatgggaa 45425638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 48199873 - 48199811
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||| ||||| ||||||||| | |  |||||||||||||||| |||||||||||    
T  48199873 caaatcattgattaaatttataattgattgaagttgatctttcaataggaaccaaacgaacac 48199811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 53099886 - 53099836
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||||||||| |||||||||| | |||| ||||||||||||||||    
T  53099886 caaatcattgattgaacttgtaattgactcatgctgatctttcaataggaa 53099836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 26739429 - 26739462
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacaca 289  Q
    |||||| |||||||||||||||||||||||||||    
T  26739429 tcaaacgacgccgcacaagacaatgaacaacaca 26739462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 18763575 - 18763513
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  18763575 caaatgattggttgaatttgtaattgattgatgccgatctttcaataggaactaaacgaacac 18763513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 12677430 - 12677490
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaatag 232  Q
    ||||||| || | ||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  12677430 caacgttgacgcccaaatcattggttgaatttgtaattgacttatgccgatctttcaatag 12677490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 19028877 - 19028957
Alignment:
Q  155 ccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||||||  |||| ||||||| || ||||||| |||||||||||||||| |||| | | | |||||||||||||||||    
T  19028877 ccatgcttctggatttgcaacgttgacgctcaaatcattgattgaatttgtacttgactgaagtcgatctttcaataggaa 19028957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 1415677 - 1415614
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||| || | ||||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  1415677 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaataggaa 1415614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 29173700 - 29173774
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| |||| ||||| ||||||||||||||||||||| | ||| ||| |||||||||||||  ||||||||||    
T  29173700 caacgttgacacccaaataattgattgaatttgtaattga-tgatgtcgagctttcaataggaactaaacgaacac 29173774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 14416261 - 14416163
Alignment:
Q  191 attgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacacatgtgaagtcaaacaacgccgcacaagacaatgaacaacacaa 290  Q
    ||||||||||| ||||||||| | | | |||| |||||| ||||| |||||||| |||  |||| |||||||||||| |||||||| | |||||| ||||    
T  14416261 attgattgaatctgtaattgactgaagtcgatatttcaacaggaaccaaacgaagaca--tgaaatcaaacaacgccacacaagacgacgaacaatacaa 14416164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 4904108 - 4904200
Alignment:
Q  155 ccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||||||  || | ||||||| |||| ||||| ||   |||||||||||||||| | ||| ||||||||||||| ||| |||||||||||    
T  4904108 ccatgcttctggatctgcaacgttgacacccaaatcatcagttgaatttgtaattgactgatgtcgatctttcaatatgaaccaaacgaacac 4904200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 30400015 - 30400090
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || | ||||| ||||||||||||||||||||| | | |  ||||||||||||||||  ||||||||||    
T  30400015 caacgttgacgcccaaatcattgattgaatttgtaattgactgaagttgatctttcaataggaactaaacgaacac 30400090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 33923825 - 33923762
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||| || | ||||| |||| |||||||||||||||| | ||| |||||||||||||||||    
T  33923825 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaataggaa 33923762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 7677866 - 7677916
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  7677866 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 7677916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 8809387 - 8809337
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||||||||| |||||||||| | ||| |||||||||||||||||    
T  8809387 caaatcattgattgaacttgtaattgactgatgtcgatctttcaataggaa 8809337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 12647993 - 12648031
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaacacc 294  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  12647993 tcaaacaacgccgcacaagacgacgaacaacacaacacc 12648031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 31210600 - 31210650
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  31210600 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 31210650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 36175489 - 36175551
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||| |||||||| || |||  ||||||||||||| || |||||||||||    
T  36175489 caaatcattgattgaatatgtaattgtttgatgttgatctttcaatagaaaccaaacgaacac 36175551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 31128774 - 31128835
Alignment:
Q  186 aaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||| ||||||||||||||||||||| | ||  |||| ||||||||||||  ||||||||||    
T  31128774 aaatcattgattgaatttgtaattgactgatatcgatttttcaataggaactaaacgaacac 31128835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 37416745 - 37416700
Alignment:
Q  248 atgtgaagtcaaacaacgccgcacaagacaatgaacaacacaacac 293  Q
    ||||||| |||||||||| |||||||||| | ||||||||||||||    
T  37416745 atgtgaaatcaaacaacgtcgcacaagacgacgaacaacacaacac 37416700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 25509067 - 25509123
Alignment:
Q  191 attgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||||||||||||||||| | |||  ||||||||||| ||||  ||||||||||    
T  25509067 attgattgaatttgtaattgactgatgttgatctttcaatgggaactaaacgaacac 25509123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 1476 - 1379
Alignment:
Q  150 aattcccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||||||||| |  | ||||||| || | |||||||||| | |||||||||||||| | |||||||||||||||||||||  ||||||||||    
T  1476 aattcacatgcttctagaactgcaacgttgacgcccaaattattggtcgaatttgtaattgactgatgccgatctttcaataggaactaaacgaacac 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 30608494 - 30608570
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacaca 248  Q
    ||||||| |||| ||||| |||| |||||||||||||||| ||||| |||||||||||||||||  ||| |||||||    
T  30608494 caacgttgacacccaaatcattggttgaatttgtaattgacttatgtcgatctttcaataggaactaaatgaacaca 30608570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 11321461 - 11321523
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||||||||||||| | ||| |||||||||||||||||  ||||||||||    
T  11321461 caaataattgattgaatttgtaattgactgatgtcgatctttcaataggaactaaacgaacac 11321523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 4010491 - 4010564
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaaca 246  Q
    |||||| ||||| ||||| ||||||||||| ||||||||||| ||   |||||||||||||||||||||| ||||    
T  4010491 caacgtcaacacccaaatcattgattgaatatgtaattgattgat-atgatctttcaataggaatcaaacaaaca 4010564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 29255438 - 29255500
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||||||||||||| | |||  ||||||||||||||||  ||||||||||    
T  29255438 caaatcattgattgaatttgtaattgactgatgaagatctttcaataggaactaaacgaacac 29255500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 31575494 - 31575560
Alignment:
Q  180 acactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaaca 246  Q
    ||||||||||||| |||||||||||||||||| | |   |||| ||||||||||||||| |||||||    
T  31575494 acactcaaattatcgattgaatttgtaattgagtgaaatcgatttttcaataggaatcagacgaaca 31575560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 127780 - 127717
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||| || | ||||| |||||| |||||||||||||| | ||| |||||||||||||||||    
T  127780 caacgttgacgcccaaatcattgatcgaatttgtaattgactgatgtcgatctttcaataggaa 127717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 12170579 - 12170516
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||| |||  ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  12170579 caacgttgacatccaaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 12170516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 30894698 - 30894636
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||| |||||||||||||||| | ||| ||||||||||||| |||  ||||||||||    
T  30894698 caaatcattggttgaatttgtaattgactgatgtcgatctttcaatatgaactaaacgaacac 30894636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 3913567 - 3913616
Alignment:
Q  186 aaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    |||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  3913567 aaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 3913616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 23128731 - 23128670
Alignment:
Q  170 tacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaata 231  Q
    ||||||||| |||  ||||| ||||||||||||||||||||| | |||  ||||||||||||    
T  23128731 tacaacgttgacatccaaatcattgattgaatttgtaattgactgatgttgatctttcaata 23128670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 22571492 - 22571456
Alignment:
Q  256 tcaaacaacgccgcacaagacaatgaacaacacaaca 292  Q
    ||||||||||||||||||||| | |||||||||||||    
T  22571492 tcaaacaacgccgcacaagacgacgaacaacacaaca 22571456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 10021 - 10096
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || ||||||| |||| |||||||||||||||||  ||| |||||||||||||||||| ||| ||||||    
T  10021 caacgttgactctcaaatcattggttgaatttgtaattgatcgatgtcgatctttcaataggaattaaatgaacac 10096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 44311779 - 44311840
Alignment:
Q  180 acactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaac 241  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||||| ||||| || |||||    
T  44311779 acacccaaattattgattgaatttgtaattgacttaagccgatcttttaatagaaaccaaac 44311840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 37837437 - 37837512
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| || | ||||| |||| |||||||||||||||| | ||| |||||||||||||||||  ||||||||||    
T  37837437 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaataggaactaaacgaacac 37837512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 39328769 - 39328832
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||| || | ||||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  39328769 caacgttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaataggaa 39328832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 38798880 - 38798830
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  38798880 caaatcattggttgaatttgtaattgactgatgccgatctttcaataggaa 38798830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 22087430 - 22087353
Alignment:
Q  171 acaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacaca 248  Q
    |||||||| |||| ||| | ||||||||||||||||||||| | | |  |||||||||||||| ||||||| ||||||    
T  22087430 acaacgttgacacccaagtcattgattgaatttgtaattgactgaagttgatctttcaataggtatcaaacaaacaca 22087353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 24770380 - 24770283
Alignment:
Q  150 aattcccatgcttctatatttacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||||||||  || | ||||||| || | ||||| |||| |||||||||| ||||| | ||||||||||||||||| |||  ||||||||||    
T  24770380 aattcacatgcttctggatcttcaacgttgacgcccaaatcattggttgaatttgtgattgactgatgccgatctttcaataagaaataaacgaacac 24770283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 45349792 - 45349853
Alignment:
Q  186 aaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||| |||| |||||||||||||||| | ||||| |||||||||||||||  ||||||||||    
T  45349792 aaatcattgcttgaatttgtaattgactgatgccaatctttcaataggaactaaacgaacac 45349853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 25287176 - 25287224
Alignment:
Q  183 ctcaaattattgattgaatttgtaattgatttatgccgatctttcaata 231  Q
    ||||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  25287176 ctcaaatcattgattgaatttgtaattgattgatgtcaatctttcaata 25287224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 22742967 - 22742924
Alignment:
Q  248 atgtgaagtcaaacaacgccgcacaagacaatgaacaacacaac 291  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||    
T  22742967 atgtgaaatcaaacaacgccgcacaagacgacgaacaacacaac 22742924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 24350905 - 24350948
Alignment:
Q  248 atgtgaagtcaaacaacgccgcacaagacaatgaacaacacaac 291  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||    
T  24350905 atgtgaaatcaaacaacgccgcacaagacgacgaacaacacaac 24350948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 38880557 - 38880632
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||||||  ||| ||||| ||||||||||||||| ||||| | | || |||||||||||| ||| |||||||||||    
T  38880557 caacgttggcacccaaatcattgattgaatttgtgattgactgaagctgatctttcaataagaaccaaacgaacac 38880632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 5348584 - 5348646
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||||||| ||||||||||| |    |||||||||||||||| |||||||||||    
T  5348584 caaatcattgattgaatctgtaattgattgaaattgatctttcaataggaaccaaacgaacac 5348646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 5792895 - 5792833
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| ||||||| || |||||||||| | ||| |||||||||||||||||  ||||||||||    
T  5792895 caaatcattgatttaacttgtaattgactgatgtcgatctttcaataggaactaaacgaacac 5792833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 8001538 - 8001588
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  8001538 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 8001588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 9450129 - 9450179
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  9450129 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 9450179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 46700134 - 46700072
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||| |||||||||||||||| |||| | ||| |||| ||||||||||||  ||||||||||    
T  46700134 caaatcattgattgaatttgtagttgactgatgtcgatatttcaataggaactaaacgaacac 46700072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 48316804 - 48316854
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  48316804 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 48316854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 22743056 - 22742983
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaac 245  Q
    ||||||| || ||||||| ||||||||||||||| ||||  | | || |||||||||||| ||| |||||||||    
T  22743056 caacgttgacgctcaaatcattgattgaatttgtgattggctgaagctgatctttcaatacgaaccaaacgaac 22742983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 29844953 - 29844901
Alignment:
Q  195 attgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||||||||| ||||| ||| |||||||||| || ||||||| |||||||    
T  29844953 attgaatttgtaactgattgatgtcgatctttcactaagaatcaatcgaacac 29844901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 71279 - 71354
Alignment:
Q  172 caacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    ||||||| |||| | ||| ||||||||||||| ||||||| | |||||||||||| ||||||||  ||||||||||    
T  71279 caacgttgacaccccaatcattgattgaatttataattgactgatgccgatctttaaataggaactaaacgaacac 71354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 8161 - 8105
Alignment:
Q  191 attgattgaatttgtaattgatttatgccgatctttcaataggaatcaaacgaacac 247  Q
    |||||||||||||||| |||||| ||| ||||||||||| |||||  ||||||||||    
T  8161 attgattgaatttgtatttgattgatgtcgatctttcaacaggaactaaacgaacac 8105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 31264 - 31316
Alignment:
Q  183 ctcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    |||||||  |||||||||||||||||||| | ||| |||||||||||||||||    
T  31264 ctcaaatcgttgattgaatttgtaattgagtgatgtcgatctttcaataggaa 31316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 32739 - 32789
Alignment:
Q  185 caaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||    
T  32739 caaatcattgcttgaatttgtaattgattgatgtagatctttcaataggaa 32789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 71841 - 71906
Alignment:
Q  170 tacaacgttaacactcaaattattgattgaatttgtaattgatttatgccgatctttcaataggaa 235  Q
    ||||||||| |||  ||||| |||| |||||||||||||||| | |||  ||||||||||||||||    
T  71841 tacaacgttgacatccaaatcattggttgaatttgtaattgactaatgtagatctttcaataggaa 71906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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