View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_21 (Length: 278)
Name: NF8382_low_21
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 47712998 - 47712736
Alignment:
| Q |
1 |
attggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaagaaagat |
100 |
Q |
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| T |
47712998 |
attggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcattttgctgattgtttaaagaaagat |
47712899 |
T |
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| Q |
101 |
attgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtg |
200 |
Q |
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| T |
47712898 |
attgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtg |
47712799 |
T |
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| Q |
201 |
agagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatg |
263 |
Q |
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| T |
47712798 |
agagtatcgcgaagaggatttttcctagggaggagtatgaaggtgtggaggaggcgcattatg |
47712736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 19785489 - 19785750
Alignment:
| Q |
2 |
ttggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaagaaagata |
101 |
Q |
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| T |
19785489 |
ttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatc |
19785588 |
T |
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| Q |
102 |
ttgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtga |
201 |
Q |
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| T |
19785589 |
ttcagtttttgaaatctgggttgcccaataaaatcagccttgctgctaaatggtgcccttctgttgactcttcctttgatcgatcgactcttctgtgtga |
19785688 |
T |
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| Q |
202 |
gagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatg |
263 |
Q |
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|||||| ||||||||||| || ||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
19785689 |
gagtattgcaaagaggatcttccctcgggaggaatatgaaggtgtggaggaggcacattatg |
19785750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 263
Target Start/End: Complemental strand, 19796095 - 19795837
Alignment:
| Q |
5 |
gctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaagaaagatattg |
104 |
Q |
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| T |
19796095 |
gctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcacgattgtatctctgatcatttcgctgattgtttgaagaaggatctcg |
19795996 |
T |
|
| Q |
105 |
agtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtgagag |
204 |
Q |
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| T |
19795995 |
agtttttgaaatccgggtcgcccaataaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgatcggtcaactcttctgtgtgagac |
19795896 |
T |
|
| Q |
205 |
tatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatg |
263 |
Q |
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|| || |||| ||| || |||||||||||||||||||||||||||||||| ||||||| |
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| T |
19795895 |
cattgccaagaagatcttccctagggaggagtatgaaggtgtggaggaggcacattatg |
19795837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 263
Target Start/End: Complemental strand, 15835405 - 15835144
Alignment:
| Q |
2 |
ttggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaagaaagata |
101 |
Q |
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|||||||||||||||||||| || || |||||||||||| |||||||||| |||||| ||||||| ||| |||||||| |||||||||| ||||| ||| |
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| T |
15835405 |
ttggctaagaagcttgttgatcgatacaatcgtgaccctgattttaagttccttcataattgtatctctcatcattttgctgattgtttgaagaaggatc |
15835306 |
T |
|
| Q |
102 |
ttgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtga |
201 |
Q |
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||||||||||||||| |||||| ||| ||| || ||||||||||| |||||||| || || || ||||||| |||||| || | || | ||||||| |
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| T |
15835305 |
ttgagtttttgaaatctgggtcacccagaaaaatcagtcttgctgctaaatggtgcccctctctttactcttcctttgatcggtcaactcttctgtgtga |
15835206 |
T |
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| Q |
202 |
gagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatg |
263 |
Q |
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|| || || |||||||| || ||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
15835205 |
gaccattgccaagaggatattccctcgggaggaatatgaaggtgtggaggaggcgcattatg |
15835144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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