View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8382_low_25 (Length: 242)

Name: NF8382_low_25
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8382_low_25
NF8382_low_25
[»] chr6 (9 HSPs)
chr6 (1-225)||(15311186-15311406)
chr6 (1-225)||(15316480-15316700)
chr6 (14-210)||(19232491-19232681)
chr6 (81-209)||(17079544-17079673)
chr6 (81-211)||(11061207-11061338)
chr6 (51-211)||(17874152-17874313)
chr6 (172-208)||(19227264-19227300)
chr6 (81-126)||(26526189-26526234)
chr6 (81-137)||(33019639-33019695)
[»] chr3 (20 HSPs)
chr3 (81-225)||(46909004-46909149)
chr3 (81-214)||(50543879-50544013)
chr3 (55-214)||(24124189-24124349)
chr3 (27-214)||(49500679-49500862)
chr3 (17-214)||(23818176-23818369)
chr3 (74-211)||(47536919-47537057)
chr3 (55-214)||(26845503-26845663)
chr3 (81-211)||(32093268-32093399)
chr3 (52-214)||(43122014-43122177)
chr3 (52-127)||(46665109-46665184)
chr3 (81-211)||(11639624-11639755)
chr3 (81-211)||(33121668-33121799)
chr3 (48-214)||(38898594-38898761)
chr3 (81-225)||(27925399-27925544)
chr3 (81-211)||(36635096-36635227)
chr3 (92-140)||(8695314-8695362)
chr3 (92-140)||(9047201-9047249)
chr3 (55-150)||(25341747-25341842)
chr3 (100-211)||(19221802-19221914)
chr3 (93-137)||(54558855-54558899)
[»] chr8 (6 HSPs)
chr8 (51-221)||(11155146-11155317)
chr8 (81-211)||(17658489-17658620)
chr8 (51-219)||(36156785-36156954)
chr8 (81-214)||(26031150-26031284)
chr8 (55-149)||(23679795-23679889)
chr8 (81-210)||(45256180-45256310)
[»] chr1 (14 HSPs)
chr1 (6-210)||(7397064-7397263)
chr1 (51-214)||(21335570-21335734)
chr1 (81-214)||(26720357-26720491)
chr1 (55-211)||(41181842-41181999)
chr1 (81-214)||(41061492-41061626)
chr1 (51-214)||(12173836-12174000)
chr1 (81-211)||(49968985-49969116)
chr1 (55-140)||(30111347-30111432)
chr1 (81-211)||(17707654-17707785)
chr1 (81-211)||(25591825-25591956)
chr1 (81-211)||(43810468-43810599)
chr1 (81-211)||(47107031-47107162)
chr1 (81-149)||(9903679-9903747)
chr1 (81-125)||(10711551-10711595)
[»] chr5 (10 HSPs)
chr5 (55-214)||(40089971-40090131)
chr5 (55-214)||(4922866-4923026)
chr5 (55-211)||(6048856-6049012)
chr5 (51-214)||(20591764-20591929)
chr5 (55-210)||(20209071-20209227)
chr5 (81-211)||(34874790-34874921)
chr5 (81-211)||(4416051-4416182)
chr5 (91-211)||(7001116-7001237)
chr5 (103-211)||(3727725-3727834)
chr5 (172-208)||(22095604-22095640)
[»] chr7 (11 HSPs)
chr7 (81-214)||(4076933-4077067)
chr7 (8-126)||(10282257-10282370)
chr7 (81-211)||(27941845-27941976)
chr7 (81-211)||(29113900-29114031)
chr7 (81-211)||(34231357-34231488)
chr7 (81-211)||(7459022-7459153)
chr7 (81-140)||(28060236-28060295)
chr7 (172-208)||(17804696-17804732)
chr7 (172-208)||(34518958-34518994)
chr7 (81-137)||(39060168-39060224)
chr7 (172-208)||(45987800-45987836)
[»] chr4 (16 HSPs)
chr4 (81-214)||(18935326-18935460)
chr4 (81-211)||(20395254-20395385)
chr4 (81-211)||(10563660-10563791)
chr4 (81-211)||(53779703-53779834)
chr4 (81-210)||(12881037-12881167)
chr4 (91-208)||(53487307-53487425)
chr4 (81-140)||(42823102-42823161)
chr4 (81-210)||(30274164-30274294)
chr4 (92-211)||(34322670-34322790)
chr4 (81-161)||(42777896-42777976)
chr4 (81-211)||(18106907-18107038)
chr4 (81-211)||(29554091-29554222)
chr4 (81-211)||(31863924-31864055)
chr4 (55-158)||(449683-449786)
chr4 (91-140)||(29213404-29213453)
chr4 (172-208)||(19644741-19644777)
[»] scaffold0179 (1 HSPs)
scaffold0179 (81-214)||(7186-7320)
[»] chr2 (6 HSPs)
chr2 (48-161)||(11026725-11026838)
chr2 (81-149)||(7075770-7075838)
chr2 (8-133)||(30273590-30273710)
chr2 (81-211)||(1379740-1379871)
chr2 (81-211)||(3000099-3000230)
chr2 (92-214)||(38182422-38182545)
[»] scaffold0007 (1 HSPs)
scaffold0007 (81-211)||(181787-181918)
[»] scaffold0308 (1 HSPs)
scaffold0308 (81-210)||(11736-11866)
[»] scaffold0108 (1 HSPs)
scaffold0108 (172-208)||(10659-10695)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15311186 - 15311406
Alignment:
Q  1 ttaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagaca 100  Q
    |||||| ||||| || ||||||||| ||||||||||||||||||||     ||| ||||||||||||||||| || |||||||||||   ||||||||||    
T  15311186 ttaagtgatgcccaagcattgtaaaaggctcgaacaccacctattt-----gtgtcaaacctaaaagtagcctttatgcatttcatctgggctaaagaca 15311280  T
Q  101 tatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagcca 199  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  15311281 tatattttactttatgcaacaacctgagcataggagttacaccattattaaacagcctattattacactcattccataaaactcaagcacagagaagcca 15311380  T
Q  200 aataagctgaaggaacgatcgcgttg 225  Q
    |||||||||||||||||| |||||||    
T  15311381 aataagctgaaggaacgaccgcgttg 15311406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15316480 - 15316700
Alignment:
Q  1 ttaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagaca 100  Q
    |||||| ||||| || ||||||||| ||||||||||||||||||||     ||| ||||||||||||||||| || |||||||||||   ||||||||||    
T  15316480 ttaagtgatgcccaagcattgtaaaaggctcgaacaccacctattt-----gtgtcaaacctaaaagtagcctttatgcatttcatctgggctaaagaca 15316574  T
Q  101 tatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagcca 199  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  15316575 tatattttactttatgcaacaacctgagcataggagttacaccattattaaacagcctattattacactcattccataaaactcaagcacagagaagcca 15316674  T
Q  200 aataagctgaaggaacgatcgcgttg 225  Q
    |||||||||||||||||| |||||||    
T  15316675 aataagctgaaggaacgaccgcgttg 15316700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 19232491 - 19232681
Alignment:
Q  14 aaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttacttt 113  Q
    ||||||||||||||| |||||||||||||||  |     |||||||| |||| |||||| |||||  ||||| |||  ||| ||||| ||  || |||||    
T  19232491 aaacattgtaaagggttcgaacaccacctatcca-----tgccaaacataaatgtagcctttttggctttcaaccagtctagagacacat--ttcacttt 19232583  T
Q  114 atctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaa 210  Q
    ||| ||||||||||| |||||||||||  |||||||||||| | |||| ||||||||||||||||| |||||  |||| || |||||||| |||||||    
T  19232584 atccaacaacctgagaataggagttacaacattattaaacaccttattattacactcattccataagacccatacacaaaggagccaaatgagctgaa 19232681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 17079673 - 17079544
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || ||||| || ||||  ||||||||||||    
T  17079673 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagcctgttattacgttcattccataaa 17079574  T
Q  180 acccaagcacagagaagccaaataagctga 209  Q
    ||| || | || |  |||||||||||||||    
T  17079573 acctaaacgcacaagagccaaataagctga 17079544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 11061338 - 11061207
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||| ||||||||||| |||||||||||||||||| | |||||||||||  ||||||| || ||||| || ||||  || |||||||||    
T  11061338 tttcaaccaggctaaggacatatatttaactttatctaacaacctgggaataggagttacaacattattgaaaagcctgttattacgttcgttccataaa 11061239  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    | |||| | || |  |||||||||||||||||    
T  11061238 atccaaacgcacaatagccaaataagctgaag 11061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 17874313 - 17874152
Alignment:
Q  51 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 150  Q
    ||||||||||||||||  | |  |||||  ||||| ||| |||||||||| |||||| ||||||||||||||||||   |||| ||| ||  |||| ||     
T  17874313 tgtgccaaacctaaaaacaacttttttggctttcaaccaggctaaagacaaatatttaactttatctaacaacctggaaatagaagtgacaacatttttg 17874214  T
Q  151 aacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaag 211  Q
    |||||||| || || |  || |||||||||| |||| |||| | ||||||||||||||||||    
T  17874213 aacagcctgttattgcgttcgttccataaaatccaaacacacaaaagccaaataagctgaag 17874152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 19227264 - 19227300
Alignment:
Q  172 tccataaaacccaagcacagagaagccaaataagctg 208  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19227264 tccataaaacccaagcacaaagaagccaaataagctg 19227300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 26526189 - 26526234
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctg 126  Q
    ||||| ||| |||||||||||| |||| ||||||||||||||||||    
T  26526189 tttcaaccatgctaaagacataaatttaactttatctaacaacctg 26526234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 33019639 - 33019695
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagt 137  Q
    ||||| |||| ||||||||| ||||||||||||||| | ||||||| ||| ||||||    
T  33019639 tttcaaccaacctaaagacaaatattttactttatcaagcaacctgggcaaaggagt 33019695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 46909149 - 46909004
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||||||| ||||||||||||||||| |||||||| |||| | || |||||||||||||  ||||||||||||||||||| || | |||| |||||||     
T  46909149 tttcatccaggctaaagacatatatttaactttatccaacagcatgggcataggagttacaacattattaaacagcctattgtttcgctcagtccataac 46909050  T
Q  180 acccaagcacagagaagccaaataagctgaaggaacgatcgcgttg 225  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||    
T  46909049 acccaagcacaaagaagccaaataagctgaaggaacaaccgcgttg 46909004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 50543879 - 50544013
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| |||||| ||| ||  ||||||| || | |||||| |||||||| |||||||||    
T  50543879 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggcatagaagtgacaacattattgaagaacctattattacactcgttccataaa 50543978  T
Q  180 acccaagcacagagaagccaaataagctgaaggaa 214  Q
    |||||| | || | |||||||||||||||||||||    
T  50543979 acccaaacgcacaaaagccaaataagctgaaggaa 50544013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 24124349 - 24124189
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 154  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||  ||||||  |||||||||| |    
T  24124349 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacatgggaatataagttacaacattattaaaga 24124250  T
Q  155 gcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    | || || |||| ||||||||||||||||||| | || | ||| |||||||||||||||||    
T  24124249 gtctgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaa 24124189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 49500862 - 49500679
Alignment:
Q  27 ggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctg 126  Q
    ||||||||||||||||||| |     |||||||| |||| |||||| | |||  ||||||||| ||||||| ||||||||| ||||||| ||||||||||    
T  49500862 ggctcgaacaccacctattga-----tgccaaacttaaaggtagccttcttggctttcatccaggctaaaggcatatatttcactttatataacaacctg 49500768  T
Q  127 agcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
     | ||||| |||||  ||||||| || | |||||| || | |||||||||||| |||||| | || |  ||||||||||||||||||||    
T  49500767 ggaataggggttacaacattattgaaaaacctattattgcgctcattccataagacccaaacgcacaatagccaaataagctgaaggaa 49500679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 23818176 - 23818369
Alignment:
Q  17 cattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatc 116  Q
    ||||| || ||||||||||||||||||| |     |||||||||||||| | |||| | |||  ||| ||||| || |||||||||||||| ||||||||    
T  23818176 cattgaaacgggctcgaacaccacctatat-----gtgccaaacctaaaggcagccttcttggcttttatccaggcaaaagacatatatttcactttatc 23818270  T
Q  117 taacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    |||||||||| | ||||| ||| |  ||||||| || | |||||| || | |||||||||||| |||||| | || |  ||||||||||||||||||||    
T  23818271 taacaacctgggaataggggttgcaacattattgaaaaacctattattgcgctcattccataagacccaaacgcacaatagccaaataagctgaaggaa 23818369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 47536919 - 47537057
Alignment:
Q  74 ttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcatt 172  Q
    |||||| ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || || || || ||||  || ||    
T  47536919 ttttgcctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagtctgttattacgttcgtt 47537018  T
Q  173 ccataaaacccaagcacagagaagccaaataagctgaag 211  Q
    ||||||||||||| |||| |  |||||||||||||||||    
T  47537019 ccataaaacccaaacacacaagagccaaataagctgaag 47537057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 26845503 - 26845663
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 154  Q
    ||||||||||||  | || |||||  ||||| ||| |||||||||||| |||| ||||||| |||||||||||| |||| ||| ||  ||||||| || |    
T  26845503 ccaaacctaaaaacaacctttttggctttcaaccatgctaaagacataaatttaactttatgtaacaacctgagaatagaagtaacaacattattgaaga 26845602  T
Q  155 gcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    | || || ||||  |||||||||||||||||  |||| | ||||||||| |||||||||||    
T  26845603 gtctgttattacgttcattccataaaacccatacacacaaaagccaaatcagctgaaggaa 26845663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 32093399 - 32093268
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || ||||| || ||||  || |||||||||    
T  32093399 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagcctgttattacgttcgttccataaa 32093300  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    || ||| | || |  |||||||||||||||||    
T  32093299 actcaaacgcacaagagccaaataagctgaag 32093268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 43122177 - 43122014
Alignment:
Q  52 gtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaa 151  Q
    |||||||||||||| | |||| | |||  ||||||| | ||||||||||||||||| |||||||| ||||||||  | ||||| |||||  ||||||| |    
T  43122177 gtgccaaacctaaaggcagccttcttggctttcatctaggctaaagacatatatttcactttatccaacaacctaggaataggggttacaacattattga 43122078  T
Q  152 acagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    | | |||||| || | |||||| ||||| |||||| | || |  ||||||||||||||||||||    
T  43122077 aaaacctattattgcgctcatttcataagacccaaacgcacaatagccaaataagctgaaggaa 43122014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 46665109 - 46665184
Alignment:
Q  52 gtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctga 127  Q
    |||||||||||||| | |||| | |||  ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  46665109 gtgccaaacctaaaggcagccttcttggctttcatccaggctaaagacatatatttcactttatctaacaacctga 46665184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 11639624 - 11639755
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || | | | || ||||  || |||||||||    
T  11639624 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaaccttgttattacgttcgttccataaa 11639723  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  |||||||||||||||||    
T  11639724 acccaaacgcacaagagccaaataagctgaag 11639755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 33121799 - 33121668
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||| ||||||   |||||| || ||||| || ||||  || |||||||||    
T  33121799 tttcaaccaggctaaagacatatatttaactttatctaacaacttgggaatagaagttacaatattattgaaaagcctgttgttacgttcgttccataaa 33121700  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  |||||||||||||||||    
T  33121699 acccaaacgcacaatagccaaataagctgaag 33121668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 38898594 - 38898761
Alignment:
Q  48 atttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccatta 147  Q
    ||||||| |||||||||| | | || | |||  ||||||| | ||||||||||||||||| |||||||||||||| |||   ||||| |||||  |||||    
T  38898594 atttgtgtcaaacctaaaggcaaccttcttgactttcatctaggctaaagacatatatttcactttatctaacaatctggaaataggggttacaacatta 38898693  T
Q  148 ttaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    || || | |||||| || | |||||| ||||| |||||| |||| |  || |||||||||||||||||    
T  38898694 ttgaaaaacctattattgcgctcatttcataagacccaaacacacaatagtcaaataagctgaaggaa 38898761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 27925544 - 27925399
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||||||||  ||| |||||||| ||||||||||| |||||||||   |||||||||||   ||| ||| |||||||||| |||   ||| ||||| ||    
T  27925544 tttcatccaacataatgacatatactttactttatccaacaacctggtaataggagttacaagattgttatacagcctattattatgttcaatccatgaa 27925445  T
Q  180 acccaagcacagagaagccaaataagctgaaggaacgatcgcgttg 225  Q
    |||||   ||| || |||||||||||||||||||| || |||||||    
T  27925444 acccagatacaaaggagccaaataagctgaaggaaagaccgcgttg 27925399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 36635096 - 36635227
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| ||||| | |||||||||| | |||| ||||||  |||||||||| ||| | || ||||| || || ||||||    
T  36635096 tttcaaccaggctaaagacatatatttaactttgtttaacaacctgggaatagaagttacaacattattaaaaagcttgttattacattcgtttcataaa 36635195  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    || ||| | || |  |||||||||||||||||    
T  36635196 actcaaacgcacaagagccaaataagctgaag 36635227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 8695362 - 8695314
Alignment:
Q  92 ctaaagacatatattttactttatctaacaacctgagcataggagttac 140  Q
    |||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  8695362 ctaaagacatatatttaactttatctaacaacctgggaatagaagttac 8695314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 9047249 - 9047201
Alignment:
Q  92 ctaaagacatatattttactttatctaacaacctgagcataggagttac 140  Q
    |||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  9047249 ctaaagacatatatttaactttatctaacaacctgggaatagaagttac 9047201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 25341842 - 25341747
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 150  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| | ||||||||||||| || | |||| ||||||  ||||||||    
T  25341842 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaattttatctaacaacttgggaatagaagttaccacattatta 25341747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 19221802 - 19221914
Alignment:
Q  100 atatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagcc 198  Q
    |||||||| |||||||||||||||||| | |||| ||||||  ||||||| || || || || ||||  || ||||||||||||||| | || |  |||     
T  19221802 atatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagct 19221901  T
Q  199 aaataagctgaag 211  Q
    |||||||||||||    
T  19221902 aaataagctgaag 19221914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 54558899 - 54558855
Alignment:
Q  93 taaagacatatattttactttatctaacaacctgagcataggagt 137  Q
    |||||||| |||||||||||||||||||||| |  ||||||||||    
T  54558899 taaagacaaatattttactttatctaacaacttaggcataggagt 54558855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 11155146 - 11155317
Alignment:
Q  51 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 150  Q
    |||||||||| |||| | |||| ||||| ||||||| ||||||||||||| |||||| |||||||||| ||||||  |||||||||||||  |||||||     
T  11155146 tgtgccaaacttaaaggcagcctttttggatttcatacaagctaaagacaaatatttcactttatctagcaacctaggcataggagttacaacattattg 11155245  T
Q  151 aacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgc 221  Q
    || |||||||| || | |||||||||||| |||||  | || |  ||||||||||| |||||||| ||||||    
T  11155246 aaaagcctattattgcgctcattccataagacccacacgcacaatagccaaataagttgaaggaatgatcgc 11155317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 17658489 - 17658620
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||||||||||  || |||| || ||||| || ||||  || |||||||||    
T  17658489 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaataggagttacaacaatattgaaaagcctgttattacgttcgttccataaa 17658588  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  |||||||||||||||||    
T  17658589 acccaaacgcacaatagccaaataagctgaag 17658620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 36156785 - 36156954
Alignment:
Q  51 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 150  Q
    |||||||||| |||| | |||| ||||| ||||||||||  ||||||||| |||||| |||||||||| ||||||  |||||||| ||||  |||||||     
T  36156785 tgtgccaaacttaaaggcagcctttttggatttcatccagactaaagacaaatatttcactttatctagcaacctaggcataggacttacaacattattg 36156884  T
Q  151 aacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatc 219  Q
    || |||||||| || | |||||| ||||| |||||  | || |  ||||||||||| |||||||| ||||    
T  36156885 aaaagcctattattgcgctcattgcataagacccacacgcacaatagccaaataagttgaaggaatgatc 36156954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 26031150 - 26031284
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| |||||||||||| |||| |||||||||||||||||| | |||| ||| ||  |||||||||| || || || ||||  ||||||||||||    
T  26031150 tttcagccatgctaaagacataaatttaactttatctaacaacctgggaatagaagtaacaacattattaaagagtctgttattacgttcattccataaa 26031249  T
Q  180 acccaagcacagagaagccaaataagctgaaggaa 214  Q
    || ||| |||| | ||| ||||| |||||||||||    
T  26031250 actcaaacacacaaaagtcaaatcagctgaaggaa 26031284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 23679795 - 23679889
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 149  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  |||||||    
T  23679795 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattatt 23679889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 45256310 - 45256180
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctat-tttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| | |||||||||||||||| | |||| ||||||  ||||||| |||| ||| |  ||    || |||||||||    
T  45256310 tttcaaccaggctaaagacatatatttaattttatctaacaacctgggaatagaagttaccacattattgaacaacctgtcattgtgttcgttccataaa 45256211  T
Q  180 acccaagcacagagaagccaaataagctgaa 210  Q
    |||||| |||| |  ||||||||||||||||    
T  45256210 acccaaacacacaagagccaaataagctgaa 45256180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 7397263 - 7397064
Alignment:
Q  6 ttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatat 105  Q
    ||||||| ||||||||||| ||| |||||||||||||||       ||||||||  |||| |||||| ||||| |||||| ||| | ||  |||| |||     
T  7397263 ttatgcccaaacattgtaa-gggttcgaacaccacctatcc-----gtgccaaatataaacgtagcctttttggatttcaaccatgttagggacacataa 7397170  T
Q  106 tttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataa 204  Q
    || |||||||| ||||||||| | |||||||||||  |||||||||||| |||||| ||||||||||||||||| |||||| |||| || |||||||| |    
T  7397169 ttcactttatccaacaacctgggaataggagttacaacattattaaacaccctattattacactcattccataagacccaaacacaaaggagccaaatga 7397070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 214
Target Start/End: Complemental strand, 21335734 - 21335570
Alignment:
Q  51 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 150  Q
    |||||||||| |||| | | || |||||| ||||| ||| ||||||||||||||||| | |||||||| ||||||| | ||| |||||||  |||||||     
T  21335734 tgtgccaaacataaaggcatcctttttgcctttcaaccaggctaaagacatatatttcagtttatctagcaacctgggaataagagttaccacattattg 21335635  T
Q  151 aacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    || |||||||| || | |||||||||||| || ||| |||| |  ||||||||||||||||||||    
T  21335634 aaaagcctattcttgcgctcattccataagactcaaacacacaatagccaaataagctgaaggaa 21335570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 26720357 - 26720491
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| |||||||||||| |||| |||||||||||||||||| | |||| ||| ||  ||||||| || || || || ||||  ||||||||||||    
T  26720357 tttcaaccatgctaaagacataaatttaactttatctaacaacctgggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaa 26720456  T
Q  180 acccaagcacagagaagccaaataagctgaaggaa 214  Q
    |||||| |||| | ||||||||| |||||||||||    
T  26720457 acccaaacacacaaaagccaaatcagctgaaggaa 26720491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 41181842 - 41181999
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 154  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || |    
T  41181842 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaa 41181941  T
Q  155 gcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaag 211  Q
    | || || ||||  || ||||||||||||||| | || |  |||||||||||||||||    
T  41181942 gtctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaag 41181999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 41061626 - 41061492
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| || ||||||||| |||| |||||||||||||||||||| |||| ||| ||  ||||||| || || || || ||||  ||||||||||||    
T  41061626 tttcaaccatgcaaaagacataaatttaactttatctaacaacctgagaatagaagtaacaacattattgaagagtctgttattacgttcattccataaa 41061527  T
Q  180 acccaagcacagagaagccaaataagctgaaggaa 214  Q
    |||||| |||| | ||| ||||| |||||||||||    
T  41061526 acccaaacacacaaaagtcaaatcagctgaaggaa 41061492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 12173836 - 12174000
Alignment:
Q  51 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 150  Q
    ||||||||||||||| | | || | |||  ||||||| | ||||||||||||||||| |||||||||||||||||| | |||||  ||||  |||||||     
T  12173836 tgtgccaaacctaaaggcaaccttcttggctttcatctaggctaaagacatatatttcactttatctaacaacctgggaatagggcttacaacattattg 12173935  T
Q  151 aacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    || | |||||| || | |||||||||||| | |||| | || |  ||||||||||| ||||||||    
T  12173936 aaaaacctattattgcgctcattccataagatccaaacgcacaatagccaaataagttgaaggaa 12174000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 49968985 - 49969116
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||  || | |||| ||||||  |||||||||| || || || ||||  || |||||||||    
T  49968985 tttcaaccaggctaaagacatatatttaactttatctaacaagttgggaatagaagttacaacattattaaaaagtctgttattacgttcgttccataaa 49969084  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    || ||| |||| |  |||||||||||||||||    
T  49969085 actcaaacacacaagagccaaataagctgaag 49969116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 30111432 - 30111347
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 140  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  30111432 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctggggatagaagttac 30111347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 17707654 - 17707785
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||    |||| ||||||  ||||||| || || || || ||||  || |||||||||    
T  17707654 tttcaaccaggctaaagacatatatttaactttatctaacaacctagaaatagaagttacaacattattgaaaagtctgttattacgttcgttccataaa 17707753  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  |||||||||||||||||    
T  17707754 acccaaacgcacaagagccaaataagctgaag 17707785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 25591956 - 25591825
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| |||||||| |||||||| |||||||||| ||||||||| |||| ||||||  ||||||| || | ||| || ||||  || |||||||||    
T  25591956 tttcaaccaggctaaagatatatatttaactttatctagcaacctgagaatagaagttacaacattattgaaaaccctgttattacgttcgttccataaa 25591857  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    || ||| | || |  |||||||||||||||||    
T  25591856 actcaaacgcatacgagccaaataagctgaag 25591825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 43810468 - 43810599
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| |||| |||||||||  |||||||||||||| ||||||||  |||||||||| |    |||||| |||| |||||| ||||  ||| |||||||     
T  43810468 tttcaaccaacctaaagacaagtattttactttatccaacaacctaggcataggagtaatagaattattgaacaacctattattacgttcagtccataac 43810567  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    ||||| ||||| ||||||||||| ||| ||||    
T  43810568 acccaggcacaaagaagccaaatgagccgaag 43810599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 47107162 - 47107031
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctat-tttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| | |||||| ||||||||| | |||| || |||  ||||||| |||||||| |  || |  || |||||||||    
T  47107162 tttcagccaggctaaagacatatatttaattttatcaaacaacctgggaatagaagataccacattattgaacagcctgtcattgcgttcgttccataaa 47107063  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| |||| |  |||||||||||||||||    
T  47107062 acccaaacacacaagagccaaataagctgaag 47107031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 9903747 - 9903679
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 149  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||| ||||||  |||||||    
T  9903747 tttcaaccaggctaaagacatatatttaactttatctaacaacttgggaatagaagttacaacattatt 9903679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 10711595 - 10711551
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacct 125  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||||    
T  10711595 tttcaaccaggctaaagacatatatttaaccttatctaacaacct 10711551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 40089971 - 40090131
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 154  Q
    ||||||||||||  | || |||||  ||||| ||||||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || |    
T  40089971 ccaaacctaaaaccaacctttttggctttcaaccaagctaaagacatatatttgactttatctaacaacctgggaatagaagttacaacattattgaaaa 40090070  T
Q  155 gcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    |||| || |||| ||| ||||||| |||||||   || | |||||||||||||||||||||    
T  40090071 gcctgttattacgctcgttccatagaacccaacagcacaaaagccaaataagctgaaggaa 40090131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 4922866 - 4923026
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 154  Q
    ||||||||||||  | ||||||||  ||||| ||| ||||| |||||| |||| |||||||||||||||||| | |||| ||||||  ||||||| || |    
T  4922866 ccaaacctaaaaacaacccttttggctttcaaccatgctaaggacataaatttaactttatctaacaacctgggaatagaagttacaacattattgaaga 4922965  T
Q  155 gcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
    |||| || ||||  || ||||||||||||||| |||| | ||||||||| |||||||||||    
T  4922966 gcctgttattacgttcgttccataaaacccaaacacacaaaagccaaatcagctgaaggaa 4923026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 6048856 - 6049012
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 154  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| | |||||||||||||||| | |||| ||||||  ||||||| ||||    
T  6048856 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaattttatctaacaacctg-gaatagaagttaccacattattgaaca 6048954  T
Q  155 gcctat-tttacactcattccataaaacccaagcacagagaagccaaataagctgaag 211  Q
     |||||  || |  |||||||||||||||||| |||| |  |||||||||||||||||    
T  6048955 tcctatcattgcgttcattccataaaacccaaacacacaagagccaaataagctgaag 6049012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 20591764 - 20591929
Alignment:
Q  51 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccatta-tt 149  Q
    |||||||||| |||| | |||| ||||| |||||||||| |||||||||| |||||| |||||||||| ||| ||  |||||||||||||  ||||| ||    
T  20591764 tgtgccaaacttaaaggcagcctttttggatttcatccaggctaaagacaaatatttcactttatctagcaaactaggcataggagttacaacattattt 20591863  T
Q  150 aaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaa 214  Q
     || | |||||| || | |||||||||||| |||||  | || |  ||||||||||||||||||||    
T  20591864 gaaaaacctattattgcgctcattccataagacccacacgcacaatagccaaataagctgaaggaa 20591929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 20209227 - 20209071
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 154  Q
    ||||||||||||  | || |||||  ||||| ||| |||||||||||| |||| |||||||||||||||||||| |||| ||| ||  ||||||| || |    
T  20209227 ccaaacctaaaaacaacctttttggctttcaaccatgctaaagacataaatttaactttatctaacaacctgagaatagaagtaacaacattattgaaga 20209128  T
Q  155 gcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaa 210  Q
    | || || |||   |||||||||||||||||| |||| | ||||||||| |||||||    
T  20209127 gtctgttattaggttcattccataaaacccaaacacacaaaagccaaatcagctgaa 20209071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 34874921 - 34874790
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| |||| |||| ||||||  ||||||| ||  || | || ||||  ||||||||||||    
T  34874921 tttcaaccaggctaaagacatatatttaactttatctaacaacttgagaatagaagttacaacattattgaaaggcttgttattacgttcattccataaa 34874822  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  |||||||||||||||||    
T  34874821 acccaaacgcacaagagccaaataagctgaag 34874790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 4416182 - 4416051
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || ||||| || ||||   | |||||||||    
T  4416182 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagcctgttattacgtacgttccataaa 4416083  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  ||||||||||| |||||    
T  4416082 acccaaacgcacaagagccaaataagttgaag 4416051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 7001237 - 7001116
Alignment:
Q  91 gctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcac 189  Q
    ||||||||||||||||| ||||| ||||||||| || | |||| ||||||  ||||||| || ||||| || ||||  || ||||||||||||||| | |    
T  7001237 gctaaagacatatatttaactttctctaacaacttgggaatagaagttacaacattattgaaaagcctgttattacgttcgttccataaaacccaaacgc 7001138  T
Q  190 agagaagccaaataagctgaag 211  Q
    | |  ||||||||||| |||||    
T  7001137 acaagagccaaataagttgaag 7001116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 3727834 - 3727725
Alignment:
Q  103 tattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaa 201  Q
    ||||||||||| || | |||||| ||||||||||| |   ||||||| || | |||||| ||||  ||| ||||||| ||||| ||||| |||| |||||    
T  3727834 tattttactttgtccatcaacctaagcataggagtaatagcattattgaataacctattgttacgttcagtccataatacccaggcacaaagaaaccaaa 3727735  T
Q  202 taagctgaag 211  Q
    ||||||||||    
T  3727734 taagctgaag 3727725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 22095640 - 22095604
Alignment:
Q  172 tccataaaacccaagcacagagaagccaaataagctg 208  Q
    |||||||||||||| |||| |||||||||||||||||    
T  22095640 tccataaaacccaaacacaaagaagccaaataagctg 22095604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 4076933 - 4077067
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| ||||||| || ||||||| | |||| ||||||  |||| ||||| ||||| || |||| |||||||||||||    
T  4076933 tttcaaccaggctaaagacatatatttaactttatttagcaacctgggaatagaagttacaacatttttaaagagcctgttattacgctcattccataaa 4077032  T
Q  180 acccaagcacagagaagccaaataagctgaaggaa 214  Q
    |||||| |||| |  ||||||||||||||||||||    
T  4077033 acccaaacacacaacagccaaataagctgaaggaa 4077067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 10282370 - 10282257
Alignment:
Q  8 atgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattt 107  Q
    ||||| || ||||| || ||||||||||||||||||| |     |||||||||||||| | |||| |||||  ||||||||| |||||||||||||||||    
T  10282370 atgcccaagcattgaaacgggctcgaacaccacctatct-----gtgccaaacctaaaggcagcctttttggctttcatccaggctaaagacatatattt 10282276  T
Q  108 tactttatctaacaacctg 126  Q
     ||||||||||||||||||    
T  10282275 cactttatctaacaacctg 10282257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 27941976 - 27941845
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||||||||||||||  ||||||||||| || ||||||||  |||||||||| |    |||||| ||||||||||| ||||  ||| |||||||     
T  27941976 tttcaaccaagctaaagacaagtattttactttgtccaacaacctaggcataggagtaatagaattattgaacagcctattattacgttcagtccataat 27941877  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    ||||||||||| ||||||||||| ||||||||    
T  27941876 acccaagcacaaagaagccaaatgagctgaag 27941845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 29114031 - 29113900
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | || | ||||||  ||||||| || ||||| || ||||  || |||||||||    
T  29114031 tttcaaccaggctaaagacatatatttgactttatctaacaacctgggaattgaagttacaacattattgaaaagcctgttattacgttcgttccataaa 29113932  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| |||| |  |||||||||||||||||    
T  29113931 acccaaacacacaagagccaaataagctgaag 29113900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 34231357 - 34231488
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | || | ||||||  ||||||| || ||||| || ||||  || |||||||||    
T  34231357 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaattgaagttacaacattattgaaaagcctgttattacgttcgttccataaa 34231456  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    || ||| | || |  |||||||||||||||||    
T  34231457 actcaaacgcacaagagccaaataagctgaag 34231488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 7459153 - 7459022
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| |||||||||| |||||| |||||||||||||||||| | |||| ||||||  |||| || || ||||| || || |  || |||||||||    
T  7459153 tttcaaccaggctaaagacaaatatttaactttatctaacaacctgggaatagaagttacaacatttttgaaaagcctgttattgcgttcgttccataaa 7459054  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    || ||  |||| | ||||||||||||||||||    
T  7459053 actcacacacacaaaagccaaataagctgaag 7459022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 28060236 - 28060295
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 140  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  28060236 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttac 28060295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 17804696 - 17804732
Alignment:
Q  172 tccataaaacccaagcacagagaagccaaataagctg 208  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  17804696 tccataagacccaggcacagagaagccaaataagctg 17804732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 34518994 - 34518958
Alignment:
Q  172 tccataaaacccaagcacagagaagccaaataagctg 208  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  34518994 tccataaaacccaggcacaaagaagccaaataagctg 34518958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 39060224 - 39060168
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagt 137  Q
    ||||| ||||||||||||||  ||||||||||| || ||||||||  ||||||||||    
T  39060224 tttcaaccaagctaaagacaagtattttactttgtccaacaacctaggcataggagt 39060168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 45987800 - 45987836
Alignment:
Q  172 tccataaaacccaagcacagagaagccaaataagctg 208  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  45987800 tccataaaacccaggcacaaagaagccaaataagctg 45987836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 18935326 - 18935460
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||| ||||||| |||||||||||||||||| | |||| ||||||  |||||||||| || || || |||| |||||||||||||    
T  18935326 tttcaaccaggctaaagacttatatttaactttatctaacaacctgggaatagaagttacaacattattaaagagtctgttattacgctcattccataaa 18935425  T
Q  180 acccaagcacagagaagccaaataagctgaaggaa 214  Q
    ||||||   || | |||||||||||||||||||||    
T  18935426 acccaaatgcacaaaagccaaataagctgaaggaa 18935460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 20395254 - 20395385
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||| ||| | |||| ||||||  ||||||| || |||||||| ||||  || |||||||||    
T  20395254 tttcaaccaggctaaagacatatatttaactttatctaacaatctgggaatagaagttacaacattattgaaaagcctattattacgttcgttccataaa 20395353  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  |||||||||||||||||    
T  20395354 acccaaacgcacaagagccaaataagctgaag 20395385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 10563791 - 10563660
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| |||||||||| |||||| |||||||||||||||||| | |||| ||||||  |||| || || ||||| || || |  || |||||||||    
T  10563791 tttcaaccaggctaaagacaaatatttaactttatctaacaacctgggaatagaagttacaacatttttgaaaagcctgttattgcgttcgttccataaa 10563692  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| |||| | ||||||||||||||||||    
T  10563691 acccaaacacacaaaagccaaataagctgaag 10563660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 53779703 - 53779834
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| |||||||||| |||||| |||||||||||||||||| | |||| ||||||  |||| || || ||||| || || |  || |||||||||    
T  53779703 tttcaaccaggctaaagacaaatatttaactttatctaacaacctgggaatagaagttacaacatttttgaaaagcctgttattgcgttcgttccataaa 53779802  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| |||| | ||||||||||||||||||    
T  53779803 acccaaacacacaaaagccaaataagctgaag 53779834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 12881167 - 12881037
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || ||||| || ||||  || |||||||||    
T  12881167 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagcctgttattacgttcgttccataaa 12881068  T
Q  180 acccaagcacagagaagccaaataagctgaa 210  Q
    |||||| |  | |  ||||||||||||||||    
T  12881067 acccaaacgaacaagagccaaataagctgaa 12881037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 53487425 - 53487307
Alignment:
Q  91 gctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcac 189  Q
    ||||||||||||||||| |||||||||||||||||| | |||| ||| ||  ||||||| || ||||| || ||||  |||||||||||||||||| | |    
T  53487425 gctaaagacatatatttaactttatctaacaacctgggaatagaagtaacaacattattgaaaagcctgttattacgttcattccataaaacccaaacgc 53487326  T
Q  190 agagaagccaaataagctg 208  Q
    | |  ||||||||||||||    
T  53487325 acaagagccaaataagctg 53487307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 42823102 - 42823161
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 140  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  42823102 tttcaaccaggctaaagacatatatttaactttatctaacaacctgagaatagaagttac 42823161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 30274294 - 30274164
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||| ||| | |||| ||||||  ||||||| || | ||| || ||||  || |||||||||    
T  30274294 tttcaaccaggctaaagacatatatttaactttatctaacaatctgggaatagaagttacaacattattgaaaaacctgttattacgttcgttccataaa 30274195  T
Q  180 acccaagcacagagaagccaaataagctgaa 210  Q
    |||||| | || |  ||||||||||||||||    
T  30274194 acccaaacgcacaagagccaaataagctgaa 30274164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 34322790 - 34322670
Alignment:
Q  92 ctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcaca 190  Q
    |||||||||||||||| |||||||||||||||||  | |||| ||||||  ||||||| || || || || ||||  || ||||||||||||||| | ||    
T  34322790 ctaaagacatatatttaactttatctaacaacctaggaatagaagttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgca 34322691  T
Q  191 gagaagccaaataagctgaag 211  Q
     |  |||||||||||||||||    
T  34322690 caagagccaaataagctgaag 34322670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 42777896 - 42777976
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt 161  Q
    ||||| ||| ||||||||||||||||| ||||| |||||||||||| | |||| ||||||  ||||||| || ||||||||    
T  42777896 tttcaaccaggctaaagacatatatttgactttgtctaacaacctgggaatagaagttacaacattattgaaaagcctatt 42777976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 18107038 - 18106907
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||| ||||||  ||||||| || || || || ||||  || |||||||||    
T  18107038 tttcaaccaggctaaagacatatatttaactttatctaacaacttgggaatagaagttacaacattattgaaaagtctgttgttacgttcgttccataaa 18106939  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    || ||| | || |  |||||||||||||||||    
T  18106938 actcaaacgcacaatagccaaataagctgaag 18106907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 29554222 - 29554091
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||||||||||||||  ||||||||||| || ||||||||  |||||||||| |    |||||| |||| |||||| ||||  ||| |||||||     
T  29554222 tttcaaccaagctaaagacaagtattttactttgtccaacaacctaggcataggagtaatagaattattgaacaacctattattacgttcagtccataat 29554123  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    ||||| ||||| ||||||||||| || |||||    
T  29554122 acccaggcacaaagaagccaaatgagttgaag 29554091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 31863924 - 31864055
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| ||||||||||| |||||| | |||| ||||||  ||||||| || | ||| || ||||  || || ||||||    
T  31863924 tttcaaccaggctaaagacatatatttaactttatctaataacctgggaatagaagttacaacattattgaaaaccctgttattacgttcgtttcataaa 31864023  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  |||||||||||||||||    
T  31864024 acccaaacgcatacgagccaaataagctgaag 31864055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 449683 - 449786
Alignment:
Q  55 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 154  Q
    |||||||||||| || || | |||  ||||| ||| |||||||| |||||||| |||||||||||||| ||| | |||| ||||||  ||||||| || |    
T  449683 ccaaacctaaaaataaccttattggctttcaaccaggctaaagatatatatttaactttatctaacaaactgggaatagaagttacaacattattgaaaa 449782  T
Q  155 gcct 158  Q
    ||||    
T  449783 gcct 449786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 29213453 - 29213404
Alignment:
Q  91 gctaaagacatatattttactttatctaacaacctgagcataggagttac 140  Q
    |||||||||| |||||| |||||||||||||||||| | |||| ||||||    
T  29213453 gctaaagacaaatatttaactttatctaacaacctgggaatagaagttac 29213404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 19644741 - 19644777
Alignment:
Q  172 tccataaaacccaagcacagagaagccaaataagctg 208  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  19644741 tccataaaacccaggcacaaagaagccaaataagctg 19644777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 7186 - 7320
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| |||||||||||| |||| |||||||||||||||||| | |||| ||| ||  ||||||| || || || || ||||  ||||||||||||    
T  7186 tttcaaccatgctaaagacataaatttaactttatctaacaacctgggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaa 7285  T
Q  180 acccaagcacagagaagccaaataagctgaaggaa 214  Q
    |||||| |||| | ||||||||| |||||||||||    
T  7286 acccaaacacacaaaagccaaatcagctgaaggaa 7320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 11026725 - 11026838
Alignment:
Q  48 atttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccatta 147  Q
    ||||||||||||| |||| | |||| ||||| ||||||||||  ||||||||| |||||| |||||||||| |||| |  |||||||||||||  |||||    
T  11026725 atttgtgccaaacttaaaggcagcctttttggatttcatccagactaaagacaaatatttaactttatctatcaacttaggcataggagttacaacatta 11026824  T
Q  148 ttaaacagcctatt 161  Q
    || || ||||||||    
T  11026825 ttgaaaagcctatt 11026838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 7075770 - 7075838
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 149  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||    
T  7075770 tttcaaccaggctaaagacatatatttaactttatctaacaacctgagcatagaagttacaacattatt 7075838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 30273590 - 30273710
Alignment:
Q  8 atgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattt 107  Q
    |||||||||||||| ||||| || || |||||||||| |     || ||||||||||||  | || |||||  ||||| ||| |||||||||||| ||||    
T  30273590 atgcctaaacattggaaaggacttgagcaccacctatct-----gtaccaaacctaaaaacaacctttttgtctttcaaccatgctaaagacatacattt 30273684  T
Q  108 tactttatctaacaacctgagcatag 133  Q
     |||||||||||||||||||| ||||    
T  30273685 aactttatctaacaacctgagaatag 30273710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 1379740 - 1379871
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||||||||||||||||||||| ||||| ||||||| |||| | |||| ||||||  ||||||| || | |||||| |||   || |||||||      
T  1379740 tttcaaccaagctaaagacatatatttaactttgtctaacagcctgggaatagaagttacaacattattgaaaaacctattattatgttcgttccatacc 1379839  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || | ||||||||||||||||||    
T  1379840 acccaaacgcacaaaagccaaataagctgaag 1379871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 3000230 - 3000099
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||| ||||||  ||||||| || || || || ||||  || |||||||||    
T  3000230 tttcaaccaggctaaagacatatatttaactttatctaacaacttgggaatagaagttacaacattattgaaaagtctgttgttacgttcgttccataaa 3000131  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    || ||| | || |  |||||||||||||||||    
T  3000130 actcaaacgcacaatagccaaataagctgaag 3000099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 38182422 - 38182545
Alignment:
Q  92 ctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcaca 190  Q
    |||||| || ||||||||||||||| |||||||   | ||| |||||||   |||||||||||   |||| |||||| || |||||||||||||  ||||    
T  38182422 ctaaagtcaaatattttactttatccaacaacccaggaatatgagttacaaaattattaaacaatttattgttacacccagtccataaaacccagacaca 38182521  T
Q  191 gagaagccaaataagctgaaggaa 214  Q
     ||||| ||||| |||||||||||    
T  38182522 aagaaggcaaatgagctgaaggaa 38182545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 181787 - 181918
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || | ||| || ||||  || |||||||||    
T  181787 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaaccctgttattacgttcgttccataaa 181886  T
Q  180 acccaagcacagagaagccaaataagctgaag 211  Q
    |||||| | || |  |||||||||||||||||    
T  181887 acccaaacgcatacgagccaaataagctgaag 181918  T

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Target: scaffold0308 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 11736 - 11866
Alignment:
Q  81 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 179  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||| |||  ||||||  ||||||| || ||| | || ||||  || |||||||||    
T  11736 tttcaaccaggctaaagacatatatttaactttatctaacaacctgagaataaaagttacaacattattgaaaagcatgttattacgttcgttccataaa 11835  T
Q  180 acccaagcacagagaagccaaataagctgaa 210  Q
    |||||| | || |  ||| ||||||||||||    
T  11836 acccaaacgcacaagagctaaataagctgaa 11866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 10659 - 10695
Alignment:
Q  172 tccataaaacccaagcacagagaagccaaataagctg 208  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  10659 tccataaaacccaggcacaaagaagccaaataagctg 10695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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