View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_27 (Length: 237)
Name: NF8382_low_27
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_27 |
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| [»] scaffold1437 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34012188 - 34011965
Alignment:
| Q |
1 |
gccttaacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcatataaaa-cattgaacaaga |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34012188 |
gcctttacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcatataaaaacattgaacaaga |
34012089 |
T |
|
| Q |
100 |
tatcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatcgaaacatccaccaaagattgtcttgcattgttttattggcttgc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34012088 |
tatcattacataaaagataaaagaagaagaaatatagcagcttaacatgactcatggaaacagccaccaaagattgtcttgcattgttttattggcttgc |
34011989 |
T |
|
| Q |
200 |
ctcaaagttttaggtagtgaaatt |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
34011988 |
ctcaaagttttaggtagtgaaatt |
34011965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33149530 - 33149307
Alignment:
| Q |
1 |
gccttaacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcatataaaa-cattgaacaaga |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33149530 |
gcctttacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcatataaaaacattgaacaaga |
33149431 |
T |
|
| Q |
100 |
tatcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatcgaaacatccaccaaagattgtcttgcattgttttattggcttgc |
199 |
Q |
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| T |
33149430 |
tatcattacataaaagataaaagaagaagaaatatagcagcttaacatgactcatggaaacagccaccaaagattgtcttgcattgttttattggcttgc |
33149331 |
T |
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| Q |
200 |
ctcaaagttttaggtagtgaaatt |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
33149330 |
ctcaaagttttaggtagtgaaatt |
33149307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 33139538 - 33139472
Alignment:
| Q |
59 |
aagtcttaattatccttgttcatataaaacattgaacaagatatcattacataaaagataaaagaagaagaa |
130 |
Q |
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||||||||| |||||||||||||||||||||| ||||| |||| |||||||||| || |||||||||| |
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| T |
33139538 |
aagtcttaactatccttgttcatataaaacatcgaacatgata-----acataaaagagaagagaagaagaa |
33139472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 967 - 745
Alignment:
| Q |
1 |
gccttaacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcatataaaacattgaacaagat |
100 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
967 |
gcctttacatcaaaacaaaatacagatgtaggaatccttaatgttactctaagctcgtaagtcttaattatccttgttcatataaaacattgaacatgat |
868 |
T |
|
| Q |
101 |
atcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatcgaaacatccaccaaagattgtcttgcattgttttattggcttgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
867 |
atcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatggaaacaaccaccaaagattgtcttgcattgttttattggcttgcc |
768 |
T |
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| Q |
201 |
tcaaagttttaggtagtgaaatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
767 |
tcaaagttttaggtagtgaaatt |
745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3215102 - 3215324
Alignment:
| Q |
1 |
gccttaacatcaaaacaaaatacagatgcaggaatccttaatgttactctaagctcttaagtcttaattatccttgttcatataaaacattgaacaagat |
100 |
Q |
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||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3215102 |
gcctttacatccaaacaaaatacagatgcatgaatccttaatgttactctaagctcgtaagtcttaattatccttgttcatataaaacattgaacaggat |
3215201 |
T |
|
| Q |
101 |
atcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatcgaaacatccaccaaagattgtcttgcattgttttattggcttgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3215202 |
atcattacataaaagataaaagaagaagaaatatagcagctttacatgactcatggaaacaaccaccaaagattgtcttgcattgttttattggcttgcc |
3215301 |
T |
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| Q |
201 |
tcaaagttttaggtagtgaaatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
3215302 |
tcaaagttttaggtagtgaaatt |
3215324 |
T |
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